Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23795 | 3' | -53.9 | NC_005261.1 | + | 125043 | 0.73 | 0.646485 |
Target: 5'- gGCGcuGACUCgGGCaggGCCUCUAUGGCGc -3' miRNA: 3'- -CGUauCUGAGgUCG---CGGAGGUACUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 121080 | 0.73 | 0.636039 |
Target: 5'- gGCGccGGCggccgCCAGCGCCUCCA-GGCc -3' miRNA: 3'- -CGUauCUGa----GGUCGCGGAGGUaCUGc -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 122893 | 0.75 | 0.522643 |
Target: 5'- ---cAGAa-CCAGCGCCUCCggGACGg -3' miRNA: 3'- cguaUCUgaGGUCGCGGAGGuaCUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 50788 | 0.76 | 0.454555 |
Target: 5'- gGCGgcGGCcgccCCGGCGCCgccgCCAUGACGg -3' miRNA: 3'- -CGUauCUGa---GGUCGCGGa---GGUACUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 107151 | 0.79 | 0.350189 |
Target: 5'- cGCGgccauggAGGCggCCAGCGCCUCCGUcucGGCGg -3' miRNA: 3'- -CGUa------UCUGa-GGUCGCGGAGGUA---CUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 48853 | 0.79 | 0.319398 |
Target: 5'- cGCAgcAGGC-CCAGCGCCcgggCCAUGGCGg -3' miRNA: 3'- -CGUa-UCUGaGGUCGCGGa---GGUACUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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