miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23795 3' -53.9 NC_005261.1 + 639 0.68 0.872034
Target:  5'- gGCGgcGGCcgCCAGCGCCgcgUCCccGGCGc -3'
miRNA:   3'- -CGUauCUGa-GGUCGCGG---AGGuaCUGC- -5'
23795 3' -53.9 NC_005261.1 + 2279 0.71 0.768262
Target:  5'- cGCcgGGcgGCgccgCCAGCGCCUCCccgGGCa -3'
miRNA:   3'- -CGuaUC--UGa---GGUCGCGGAGGua-CUGc -5'
23795 3' -53.9 NC_005261.1 + 11062 0.7 0.796524
Target:  5'- cGCccAGGCgccgCCAGCGCgUCUAggGACGg -3'
miRNA:   3'- -CGuaUCUGa---GGUCGCGgAGGUa-CUGC- -5'
23795 3' -53.9 NC_005261.1 + 13435 0.66 0.93487
Target:  5'- cGCGUcgaccgggugcAGGCaggCCGGCGCCUCgGgGugGa -3'
miRNA:   3'- -CGUA-----------UCUGa--GGUCGCGGAGgUaCugC- -5'
23795 3' -53.9 NC_005261.1 + 14719 0.7 0.805647
Target:  5'- gGCcgAGAUUCCAGCGUCacgaCgGUGGCa -3'
miRNA:   3'- -CGuaUCUGAGGUCGCGGa---GgUACUGc -5'
23795 3' -53.9 NC_005261.1 + 31862 0.66 0.939798
Target:  5'- cGCGUcuucGGGC-CCGGCGCCUUCGcGcGCGc -3'
miRNA:   3'- -CGUA----UCUGaGGUCGCGGAGGUaC-UGC- -5'
23795 3' -53.9 NC_005261.1 + 34933 0.66 0.94448
Target:  5'- cGCGggGGGCggCCGGCGCgaCCcgGGCc -3'
miRNA:   3'- -CGUa-UCUGa-GGUCGCGgaGGuaCUGc -5'
23795 3' -53.9 NC_005261.1 + 40569 0.7 0.777822
Target:  5'- -------gUCCAGCGCCUCCAcgaacucgcUGACGu -3'
miRNA:   3'- cguaucugAGGUCGCGGAGGU---------ACUGC- -5'
23795 3' -53.9 NC_005261.1 + 41114 0.66 0.939798
Target:  5'- cGCGgcGGGC-CCgAGCGCUUCCugcGUGGCGc -3'
miRNA:   3'- -CGUa-UCUGaGG-UCGCGGAGG---UACUGC- -5'
23795 3' -53.9 NC_005261.1 + 48853 0.79 0.319398
Target:  5'- cGCAgcAGGC-CCAGCGCCcgggCCAUGGCGg -3'
miRNA:   3'- -CGUa-UCUGaGGUCGCGGa---GGUACUGC- -5'
23795 3' -53.9 NC_005261.1 + 48901 0.66 0.939798
Target:  5'- cGCAguUGGcCUCUAGCGCgagCCcgGGCGc -3'
miRNA:   3'- -CGU--AUCuGAGGUCGCGga-GGuaCUGC- -5'
23795 3' -53.9 NC_005261.1 + 50788 0.76 0.454555
Target:  5'- gGCGgcGGCcgccCCGGCGCCgccgCCAUGACGg -3'
miRNA:   3'- -CGUauCUGa---GGUCGCGGa---GGUACUGC- -5'
23795 3' -53.9 NC_005261.1 + 53008 0.72 0.698356
Target:  5'- gGCGUcGGCgcagcucgCCAGCGCUUCCGcGGCGc -3'
miRNA:   3'- -CGUAuCUGa-------GGUCGCGGAGGUaCUGC- -5'
23795 3' -53.9 NC_005261.1 + 53276 0.66 0.953113
Target:  5'- aGCAUgucgauggAGGCgCCaAGCGCCcCCGUGcGCGg -3'
miRNA:   3'- -CGUA--------UCUGaGG-UCGCGGaGGUAC-UGC- -5'
23795 3' -53.9 NC_005261.1 + 57565 0.66 0.93487
Target:  5'- cGCGcccGGCUCCGGCGCCgCguUGAgCGc -3'
miRNA:   3'- -CGUau-CUGAGGUCGCGGaGguACU-GC- -5'
23795 3' -53.9 NC_005261.1 + 58548 0.72 0.677715
Target:  5'- cGCccGGGCUCCuGCGCCgUCGUGGCc -3'
miRNA:   3'- -CGuaUCUGAGGuCGCGGaGGUACUGc -5'
23795 3' -53.9 NC_005261.1 + 60373 0.7 0.812828
Target:  5'- uGCuUGGuCUCguuggcgagguGCGCCUCCAUGGCGc -3'
miRNA:   3'- -CGuAUCuGAGgu---------CGCGGAGGUACUGC- -5'
23795 3' -53.9 NC_005261.1 + 62314 0.66 0.94448
Target:  5'- cGCGgcGGCcccgcggucccCCAGCGCCUCCAccGCGc -3'
miRNA:   3'- -CGUauCUGa----------GGUCGCGGAGGUacUGC- -5'
23795 3' -53.9 NC_005261.1 + 66674 0.67 0.912666
Target:  5'- aGCA---GCcCCAGCGCCUCgGcGGCGa -3'
miRNA:   3'- -CGUaucUGaGGUCGCGGAGgUaCUGC- -5'
23795 3' -53.9 NC_005261.1 + 67507 0.67 0.912666
Target:  5'- cGCGUAGuaggCCAGCGUCgCCGcGGCGc -3'
miRNA:   3'- -CGUAUCuga-GGUCGCGGaGGUaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.