miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23795 3' -53.9 NC_005261.1 + 126264 0.66 0.956684
Target:  5'- cGCGUccaAGAagccgucCUCCAGCGCCacgacgCCGUGGu- -3'
miRNA:   3'- -CGUA---UCU-------GAGGUCGCGGa-----GGUACUgc -5'
23795 3' -53.9 NC_005261.1 + 125043 0.73 0.646485
Target:  5'- gGCGcuGACUCgGGCaggGCCUCUAUGGCGc -3'
miRNA:   3'- -CGUauCUGAGgUCG---CGGAGGUACUGC- -5'
23795 3' -53.9 NC_005261.1 + 123344 0.66 0.948485
Target:  5'- aGCGgcucgcGGCcgaCCAGCGCCUCUAUGcuguccaGCGa -3'
miRNA:   3'- -CGUau----CUGa--GGUCGCGGAGGUAC-------UGC- -5'
23795 3' -53.9 NC_005261.1 + 123283 0.73 0.656919
Target:  5'- cGgGUGGuCcgCCAGCGCCUCCGcGAUGu -3'
miRNA:   3'- -CgUAUCuGa-GGUCGCGGAGGUaCUGC- -5'
23795 3' -53.9 NC_005261.1 + 122893 0.75 0.522643
Target:  5'- ---cAGAa-CCAGCGCCUCCggGACGg -3'
miRNA:   3'- cguaUCUgaGGUCGCGGAGGuaCUGC- -5'
23795 3' -53.9 NC_005261.1 + 121977 0.7 0.777822
Target:  5'- -----cGCUCCAGCGCCgcCCAgcUGGCGg -3'
miRNA:   3'- cguaucUGAGGUCGCGGa-GGU--ACUGC- -5'
23795 3' -53.9 NC_005261.1 + 121080 0.73 0.636039
Target:  5'- gGCGccGGCggccgCCAGCGCCUCCA-GGCc -3'
miRNA:   3'- -CGUauCUGa----GGUCGCGGAGGUaCUGc -5'
23795 3' -53.9 NC_005261.1 + 115452 0.69 0.823393
Target:  5'- cGCGgccGGACUCCucCGCCUCgGUGuCGg -3'
miRNA:   3'- -CGUa--UCUGAGGucGCGGAGgUACuGC- -5'
23795 3' -53.9 NC_005261.1 + 115154 0.7 0.796524
Target:  5'- aGCcgGGGgUCgGGCGCCUCC-UGcGCGa -3'
miRNA:   3'- -CGuaUCUgAGgUCGCGGAGGuAC-UGC- -5'
23795 3' -53.9 NC_005261.1 + 110157 0.68 0.893421
Target:  5'- gGCAUGGcCgccgCCAccGCGCCcCCcgGGCGg -3'
miRNA:   3'- -CGUAUCuGa---GGU--CGCGGaGGuaCUGC- -5'
23795 3' -53.9 NC_005261.1 + 110002 0.67 0.912666
Target:  5'- uCGUGGACacgcccgCCGGCGCCgCCGuccuuucgccUGGCGg -3'
miRNA:   3'- cGUAUCUGa------GGUCGCGGaGGU----------ACUGC- -5'
23795 3' -53.9 NC_005261.1 + 108604 0.68 0.872034
Target:  5'- cCAcGGGCaCCAGCGCCUCg--GGCGg -3'
miRNA:   3'- cGUaUCUGaGGUCGCGGAGguaCUGC- -5'
23795 3' -53.9 NC_005261.1 + 107151 0.79 0.350189
Target:  5'- cGCGgccauggAGGCggCCAGCGCCUCCGUcucGGCGg -3'
miRNA:   3'- -CGUa------UCUGa-GGUCGCGGAGGUA---CUGC- -5'
23795 3' -53.9 NC_005261.1 + 103045 0.69 0.840415
Target:  5'- cGCA-GGGC-CCAGCGCCugUCCcgGcACGg -3'
miRNA:   3'- -CGUaUCUGaGGUCGCGG--AGGuaC-UGC- -5'
23795 3' -53.9 NC_005261.1 + 101455 0.67 0.929692
Target:  5'- aGCGcuGGCcCCAGCGCCgCCGgcGGCGg -3'
miRNA:   3'- -CGUauCUGaGGUCGCGGaGGUa-CUGC- -5'
23795 3' -53.9 NC_005261.1 + 101377 0.71 0.758577
Target:  5'- -----aGCUCCGGCGCCUCCuccACGg -3'
miRNA:   3'- cguaucUGAGGUCGCGGAGGuacUGC- -5'
23795 3' -53.9 NC_005261.1 + 86318 0.68 0.872034
Target:  5'- aGCGUGcuggccacGuACUUCAGCGCgUCCAUGuCGu -3'
miRNA:   3'- -CGUAU--------C-UGAGGUCGCGgAGGUACuGC- -5'
23795 3' -53.9 NC_005261.1 + 84962 0.66 0.94448
Target:  5'- cGCcgAGGCgUCgGGCGCgUCCGcGAUGc -3'
miRNA:   3'- -CGuaUCUG-AGgUCGCGgAGGUaCUGC- -5'
23795 3' -53.9 NC_005261.1 + 84555 0.67 0.91859
Target:  5'- ---cGGGC-CCAGCGCCUggagcacggccCCGUaGACGg -3'
miRNA:   3'- cguaUCUGaGGUCGCGGA-----------GGUA-CUGC- -5'
23795 3' -53.9 NC_005261.1 + 83078 0.72 0.707573
Target:  5'- cGCGgcGGCcggcgcuUCCAGCGCCUCCA--GCGc -3'
miRNA:   3'- -CGUauCUG-------AGGUCGCGGAGGUacUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.