Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23795 | 3' | -53.9 | NC_005261.1 | + | 80579 | 0.7 | 0.796524 |
Target: 5'- ---cAGGCUCCuugaGGCGCCggcCCGUGGCc -3' miRNA: 3'- cguaUCUGAGG----UCGCGGa--GGUACUGc -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 79070 | 0.69 | 0.848634 |
Target: 5'- cGCGUGGugauCggguaCAGCGCCUUCAUGGgGu -3' miRNA: 3'- -CGUAUCu---Gag---GUCGCGGAGGUACUgC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 76054 | 0.66 | 0.957069 |
Target: 5'- aGCGUGGcCggCgGGCGCCaCCAgGGCGg -3' miRNA: 3'- -CGUAUCuGa-GgUCGCGGaGGUaCUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 75433 | 0.69 | 0.823393 |
Target: 5'- cGCGUucGACUUCgAGCGCCUCCcacggGGCc -3' miRNA: 3'- -CGUAu-CUGAGG-UCGCGGAGGua---CUGc -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 75167 | 0.71 | 0.742841 |
Target: 5'- gGCAUGGACUaCCGcgacgggcgcaugucGCGgaCCUUCAUGGCGg -3' miRNA: 3'- -CGUAUCUGA-GGU---------------CGC--GGAGGUACUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 74562 | 0.7 | 0.793756 |
Target: 5'- gGCGUGGACaUCCAcgcggucgcggaccGCGUCUUCGUGcCGg -3' miRNA: 3'- -CGUAUCUG-AGGU--------------CGCGGAGGUACuGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 67507 | 0.67 | 0.912666 |
Target: 5'- cGCGUAGuaggCCAGCGUCgCCGcGGCGc -3' miRNA: 3'- -CGUAUCuga-GGUCGCGGaGGUaCUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 66674 | 0.67 | 0.912666 |
Target: 5'- aGCA---GCcCCAGCGCCUCgGcGGCGa -3' miRNA: 3'- -CGUaucUGaGGUCGCGGAGgUaCUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 62314 | 0.66 | 0.94448 |
Target: 5'- cGCGgcGGCcccgcggucccCCAGCGCCUCCAccGCGc -3' miRNA: 3'- -CGUauCUGa----------GGUCGCGGAGGUacUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 60373 | 0.7 | 0.812828 |
Target: 5'- uGCuUGGuCUCguuggcgagguGCGCCUCCAUGGCGc -3' miRNA: 3'- -CGuAUCuGAGgu---------CGCGGAGGUACUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 58548 | 0.72 | 0.677715 |
Target: 5'- cGCccGGGCUCCuGCGCCgUCGUGGCc -3' miRNA: 3'- -CGuaUCUGAGGuCGCGGaGGUACUGc -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 57565 | 0.66 | 0.93487 |
Target: 5'- cGCGcccGGCUCCGGCGCCgCguUGAgCGc -3' miRNA: 3'- -CGUau-CUGAGGUCGCGGaGguACU-GC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 53276 | 0.66 | 0.953113 |
Target: 5'- aGCAUgucgauggAGGCgCCaAGCGCCcCCGUGcGCGg -3' miRNA: 3'- -CGUA--------UCUGaGG-UCGCGGaGGUAC-UGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 53008 | 0.72 | 0.698356 |
Target: 5'- gGCGUcGGCgcagcucgCCAGCGCUUCCGcGGCGc -3' miRNA: 3'- -CGUAuCUGa-------GGUCGCGGAGGUaCUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 50788 | 0.76 | 0.454555 |
Target: 5'- gGCGgcGGCcgccCCGGCGCCgccgCCAUGACGg -3' miRNA: 3'- -CGUauCUGa---GGUCGCGGa---GGUACUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 48901 | 0.66 | 0.939798 |
Target: 5'- cGCAguUGGcCUCUAGCGCgagCCcgGGCGc -3' miRNA: 3'- -CGU--AUCuGAGGUCGCGga-GGuaCUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 48853 | 0.79 | 0.319398 |
Target: 5'- cGCAgcAGGC-CCAGCGCCcgggCCAUGGCGg -3' miRNA: 3'- -CGUa-UCUGaGGUCGCGGa---GGUACUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 41114 | 0.66 | 0.939798 |
Target: 5'- cGCGgcGGGC-CCgAGCGCUUCCugcGUGGCGc -3' miRNA: 3'- -CGUa-UCUGaGG-UCGCGGAGG---UACUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 40569 | 0.7 | 0.777822 |
Target: 5'- -------gUCCAGCGCCUCCAcgaacucgcUGACGu -3' miRNA: 3'- cguaucugAGGUCGCGGAGGU---------ACUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 34933 | 0.66 | 0.94448 |
Target: 5'- cGCGggGGGCggCCGGCGCgaCCcgGGCc -3' miRNA: 3'- -CGUa-UCUGa-GGUCGCGgaGGuaCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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