miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23795 3' -53.9 NC_005261.1 + 76054 0.66 0.957069
Target:  5'- aGCGUGGcCggCgGGCGCCaCCAgGGCGg -3'
miRNA:   3'- -CGUAUCuGa-GgUCGCGGaGGUaCUGC- -5'
23795 3' -53.9 NC_005261.1 + 2279 0.71 0.768262
Target:  5'- cGCcgGGcgGCgccgCCAGCGCCUCCccgGGCa -3'
miRNA:   3'- -CGuaUC--UGa---GGUCGCGGAGGua-CUGc -5'
23795 3' -53.9 NC_005261.1 + 121977 0.7 0.777822
Target:  5'- -----cGCUCCAGCGCCgcCCAgcUGGCGg -3'
miRNA:   3'- cguaucUGAGGUCGCGGa-GGU--ACUGC- -5'
23795 3' -53.9 NC_005261.1 + 40569 0.7 0.777822
Target:  5'- -------gUCCAGCGCCUCCAcgaacucgcUGACGu -3'
miRNA:   3'- cguaucugAGGUCGCGGAGGU---------ACUGC- -5'
23795 3' -53.9 NC_005261.1 + 74562 0.7 0.793756
Target:  5'- gGCGUGGACaUCCAcgcggucgcggaccGCGUCUUCGUGcCGg -3'
miRNA:   3'- -CGUAUCUG-AGGU--------------CGCGGAGGUACuGC- -5'
23795 3' -53.9 NC_005261.1 + 11062 0.7 0.796524
Target:  5'- cGCccAGGCgccgCCAGCGCgUCUAggGACGg -3'
miRNA:   3'- -CGuaUCUGa---GGUCGCGgAGGUa-CUGC- -5'
23795 3' -53.9 NC_005261.1 + 80579 0.7 0.796524
Target:  5'- ---cAGGCUCCuugaGGCGCCggcCCGUGGCc -3'
miRNA:   3'- cguaUCUGAGG----UCGCGGa--GGUACUGc -5'
23795 3' -53.9 NC_005261.1 + 115154 0.7 0.796524
Target:  5'- aGCcgGGGgUCgGGCGCCUCC-UGcGCGa -3'
miRNA:   3'- -CGuaUCUgAGgUCGCGGAGGuAC-UGC- -5'
23795 3' -53.9 NC_005261.1 + 14719 0.7 0.805647
Target:  5'- gGCcgAGAUUCCAGCGUCacgaCgGUGGCa -3'
miRNA:   3'- -CGuaUCUGAGGUCGCGGa---GgUACUGc -5'
23795 3' -53.9 NC_005261.1 + 101377 0.71 0.758577
Target:  5'- -----aGCUCCGGCGCCUCCuccACGg -3'
miRNA:   3'- cguaucUGAGGUCGCGGAGGuacUGC- -5'
23795 3' -53.9 NC_005261.1 + 75167 0.71 0.742841
Target:  5'- gGCAUGGACUaCCGcgacgggcgcaugucGCGgaCCUUCAUGGCGg -3'
miRNA:   3'- -CGUAUCUGA-GGU---------------CGC--GGAGGUACUGC- -5'
23795 3' -53.9 NC_005261.1 + 83078 0.72 0.707573
Target:  5'- cGCGgcGGCcggcgcuUCCAGCGCCUCCA--GCGc -3'
miRNA:   3'- -CGUauCUG-------AGGUCGCGGAGGUacUGC- -5'
23795 3' -53.9 NC_005261.1 + 107151 0.79 0.350189
Target:  5'- cGCGgccauggAGGCggCCAGCGCCUCCGUcucGGCGg -3'
miRNA:   3'- -CGUa------UCUGa-GGUCGCGGAGGUA---CUGC- -5'
23795 3' -53.9 NC_005261.1 + 50788 0.76 0.454555
Target:  5'- gGCGgcGGCcgccCCGGCGCCgccgCCAUGACGg -3'
miRNA:   3'- -CGUauCUGa---GGUCGCGGa---GGUACUGC- -5'
23795 3' -53.9 NC_005261.1 + 122893 0.75 0.522643
Target:  5'- ---cAGAa-CCAGCGCCUCCggGACGg -3'
miRNA:   3'- cguaUCUgaGGUCGCGGAGGuaCUGC- -5'
23795 3' -53.9 NC_005261.1 + 121080 0.73 0.636039
Target:  5'- gGCGccGGCggccgCCAGCGCCUCCA-GGCc -3'
miRNA:   3'- -CGUauCUGa----GGUCGCGGAGGUaCUGc -5'
23795 3' -53.9 NC_005261.1 + 125043 0.73 0.646485
Target:  5'- gGCGcuGACUCgGGCaggGCCUCUAUGGCGc -3'
miRNA:   3'- -CGUauCUGAGgUCG---CGGAGGUACUGC- -5'
23795 3' -53.9 NC_005261.1 + 123283 0.73 0.656919
Target:  5'- cGgGUGGuCcgCCAGCGCCUCCGcGAUGu -3'
miRNA:   3'- -CgUAUCuGa-GGUCGCGGAGGUaCUGC- -5'
23795 3' -53.9 NC_005261.1 + 58548 0.72 0.677715
Target:  5'- cGCccGGGCUCCuGCGCCgUCGUGGCc -3'
miRNA:   3'- -CGuaUCUGAGGuCGCGGaGGUACUGc -5'
23795 3' -53.9 NC_005261.1 + 53008 0.72 0.698356
Target:  5'- gGCGUcGGCgcagcucgCCAGCGCUUCCGcGGCGc -3'
miRNA:   3'- -CGUAuCUGa-------GGUCGCGGAGGUaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.