miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23795 5' -63.5 NC_005261.1 + 10529 0.66 0.585814
Target:  5'- cCGCGgcGCGcu-CGCUGUCGCCcCCGg -3'
miRNA:   3'- -GCGCaaCGCcacGCGGCGGCGGaGGC- -5'
23795 5' -63.5 NC_005261.1 + 123728 0.66 0.585814
Target:  5'- aGCGUcgucGCGGUccGCaCCGCCaguagGCCUCCc -3'
miRNA:   3'- gCGCAa---CGCCA--CGcGGCGG-----CGGAGGc -5'
23795 5' -63.5 NC_005261.1 + 118923 0.66 0.585814
Target:  5'- gGCGccGCGGgcgcgGCGCCGCgCGgCUggCCGc -3'
miRNA:   3'- gCGCaaCGCCa----CGCGGCG-GCgGA--GGC- -5'
23795 5' -63.5 NC_005261.1 + 102319 0.66 0.585814
Target:  5'- cCGCGgccGCGGcGCGCaGCCGCg-CCa -3'
miRNA:   3'- -GCGCaa-CGCCaCGCGgCGGCGgaGGc -5'
23795 5' -63.5 NC_005261.1 + 2278 0.66 0.585814
Target:  5'- uCGCcggGCG--GCGCCGCCagcGCCUCCc -3'
miRNA:   3'- -GCGcaaCGCcaCGCGGCGG---CGGAGGc -5'
23795 5' -63.5 NC_005261.1 + 10375 0.66 0.585814
Target:  5'- aCGCGc-GCGcUGCGCCGCgCGCUcgUCGg -3'
miRNA:   3'- -GCGCaaCGCcACGCGGCG-GCGGa-GGC- -5'
23795 5' -63.5 NC_005261.1 + 84896 0.66 0.585814
Target:  5'- gGCGgcgaaGGUGC-CCGCCcacaCCUCCGg -3'
miRNA:   3'- gCGCaacg-CCACGcGGCGGc---GGAGGC- -5'
23795 5' -63.5 NC_005261.1 + 30007 0.66 0.580019
Target:  5'- gCGCGUcUGagcuccCGGUGCucucggcugcagcggGCCGCgGCCUgCCGg -3'
miRNA:   3'- -GCGCA-AC------GCCACG---------------CGGCGgCGGA-GGC- -5'
23795 5' -63.5 NC_005261.1 + 53145 0.66 0.576163
Target:  5'- aCGCGcgcGCcGUcGCGCCGCCGUCgUCGg -3'
miRNA:   3'- -GCGCaa-CGcCA-CGCGGCGGCGGaGGC- -5'
23795 5' -63.5 NC_005261.1 + 43795 0.66 0.576163
Target:  5'- gGCGccGCGGgugaggggGCGCCggGCgCGCCcUCCGu -3'
miRNA:   3'- gCGCaaCGCCa-------CGCGG--CG-GCGG-AGGC- -5'
23795 5' -63.5 NC_005261.1 + 15783 0.66 0.576163
Target:  5'- cCGCug-GCGG-GCGCCGCCcgcgcgGCCagcgCCGc -3'
miRNA:   3'- -GCGcaaCGCCaCGCGGCGG------CGGa---GGC- -5'
23795 5' -63.5 NC_005261.1 + 50018 0.66 0.576163
Target:  5'- aGCGc-GCGG-GCGCCcaGCCGCCgCgCGa -3'
miRNA:   3'- gCGCaaCGCCaCGCGG--CGGCGGaG-GC- -5'
23795 5' -63.5 NC_005261.1 + 64695 0.66 0.576163
Target:  5'- gCGCGUccCGG-G-GCCGCCGCCgcgcacgggCCGg -3'
miRNA:   3'- -GCGCAacGCCaCgCGGCGGCGGa--------GGC- -5'
23795 5' -63.5 NC_005261.1 + 88466 0.66 0.576163
Target:  5'- aGCGUguggGCGGgccGUGCCGC-GCCggagcgcgCCGc -3'
miRNA:   3'- gCGCAa---CGCCa--CGCGGCGgCGGa-------GGC- -5'
23795 5' -63.5 NC_005261.1 + 97751 0.66 0.576163
Target:  5'- gGCGggGCGGgcucggcgGCGCgGCCGgcaucgaCUCCc -3'
miRNA:   3'- gCGCaaCGCCa-------CGCGgCGGCg------GAGGc -5'
23795 5' -63.5 NC_005261.1 + 14965 0.66 0.576163
Target:  5'- gGCGUgccUGgGGcgacUGCGCgGCCGCg-CCGg -3'
miRNA:   3'- gCGCA---ACgCC----ACGCGgCGGCGgaGGC- -5'
23795 5' -63.5 NC_005261.1 + 83305 0.66 0.576163
Target:  5'- gCGCGggGUcgugcagcucGGgcgGCGCCacGCCGCCcgCCGc -3'
miRNA:   3'- -GCGCaaCG----------CCa--CGCGG--CGGCGGa-GGC- -5'
23795 5' -63.5 NC_005261.1 + 52802 0.66 0.570389
Target:  5'- uGCGUgccGCGGguuggcaaacagggGCGCUucgaggGCCGCCUcgCCGg -3'
miRNA:   3'- gCGCAa--CGCCa-------------CGCGG------CGGCGGA--GGC- -5'
23795 5' -63.5 NC_005261.1 + 124256 0.66 0.566547
Target:  5'- gGCGccGCGcG-GCGCCGCCcgcgcGCC-CCGg -3'
miRNA:   3'- gCGCaaCGC-CaCGCGGCGG-----CGGaGGC- -5'
23795 5' -63.5 NC_005261.1 + 104671 0.66 0.566547
Target:  5'- gGCGUgugcUGCGGcaGCGCCugggccaCCGCC-CCGa -3'
miRNA:   3'- gCGCA----ACGCCa-CGCGGc------GGCGGaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.