miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23796 3' -55.3 NC_005261.1 + 63382 0.66 0.937392
Target:  5'- -uGCCGGGuCGcCCUGGCCg------ -3'
miRNA:   3'- ccUGGCCCuGCuGGGCCGGaaauaug -5'
23796 3' -55.3 NC_005261.1 + 38362 0.66 0.937392
Target:  5'- cGGGCCuuuGGGGCGGCCgggaagCGGCaccucGUGCu -3'
miRNA:   3'- -CCUGG---CCCUGCUGG------GCCGgaaa-UAUG- -5'
23796 3' -55.3 NC_005261.1 + 30414 0.66 0.937392
Target:  5'- cGGGCCGGGGC-ACCgCGGgCg------ -3'
miRNA:   3'- -CCUGGCCCUGcUGG-GCCgGaaauaug -5'
23796 3' -55.3 NC_005261.1 + 79029 0.66 0.937392
Target:  5'- cGcCCGGGGCG-CCCGcGcCCUUg--GCg -3'
miRNA:   3'- cCuGGCCCUGCuGGGC-C-GGAAauaUG- -5'
23796 3' -55.3 NC_005261.1 + 106026 0.66 0.935441
Target:  5'- aGGACCGGaGGCacgccaccgcgcuGCCCGGCCc------ -3'
miRNA:   3'- -CCUGGCC-CUGc------------UGGGCCGGaaauaug -5'
23796 3' -55.3 NC_005261.1 + 42096 0.66 0.932442
Target:  5'- cGACCGcggugaGGAUGugCCGGCCc------ -3'
miRNA:   3'- cCUGGC------CCUGCugGGCCGGaaauaug -5'
23796 3' -55.3 NC_005261.1 + 121272 0.66 0.932442
Target:  5'- aGA-CGGGGCGGccgcCCCGGCCUc----- -3'
miRNA:   3'- cCUgGCCCUGCU----GGGCCGGAaauaug -5'
23796 3' -55.3 NC_005261.1 + 68332 0.66 0.932442
Target:  5'- -uGCCGGucGGCGACCCcuaccuGGCCga-GUGCu -3'
miRNA:   3'- ccUGGCC--CUGCUGGG------CCGGaaaUAUG- -5'
23796 3' -55.3 NC_005261.1 + 15433 0.66 0.932442
Target:  5'- cGGCCGGGcGCGGgCCGGCg------- -3'
miRNA:   3'- cCUGGCCC-UGCUgGGCCGgaaauaug -5'
23796 3' -55.3 NC_005261.1 + 110828 0.66 0.932442
Target:  5'- gGGGCCGcGGACGaguuuccgcuGCCCGcCCUg---GCg -3'
miRNA:   3'- -CCUGGC-CCUGC----------UGGGCcGGAaauaUG- -5'
23796 3' -55.3 NC_005261.1 + 119228 0.66 0.932442
Target:  5'- -uGCCGGGGCGAgCgUGGCCgauc-GCg -3'
miRNA:   3'- ccUGGCCCUGCU-GgGCCGGaaauaUG- -5'
23796 3' -55.3 NC_005261.1 + 132591 0.66 0.927254
Target:  5'- cGcCCGcGGACG-CCCGGCCcg---GCg -3'
miRNA:   3'- cCuGGC-CCUGCuGGGCCGGaaauaUG- -5'
23796 3' -55.3 NC_005261.1 + 70859 0.66 0.927254
Target:  5'- aGGuCCaGGGCGGCCgccguggcgUGGCCggcgGUGCa -3'
miRNA:   3'- -CCuGGcCCUGCUGG---------GCCGGaaa-UAUG- -5'
23796 3' -55.3 NC_005261.1 + 95955 0.66 0.927254
Target:  5'- -cGCCGGGAuCGACCCcagcgcgccGGCCa------ -3'
miRNA:   3'- ccUGGCCCU-GCUGGG---------CCGGaaauaug -5'
23796 3' -55.3 NC_005261.1 + 36298 0.66 0.927254
Target:  5'- gGGACCGGGAaacuaGGCCaCaGCCa------ -3'
miRNA:   3'- -CCUGGCCCUg----CUGG-GcCGGaaauaug -5'
23796 3' -55.3 NC_005261.1 + 97122 0.66 0.927254
Target:  5'- cGGCCGGaGGCG-CCgCGGCCa------ -3'
miRNA:   3'- cCUGGCC-CUGCuGG-GCCGGaaauaug -5'
23796 3' -55.3 NC_005261.1 + 97753 0.66 0.927254
Target:  5'- cGGGgCGGGcucgGCGGCgCGGCCg----GCa -3'
miRNA:   3'- -CCUgGCCC----UGCUGgGCCGGaaauaUG- -5'
23796 3' -55.3 NC_005261.1 + 9639 0.66 0.921826
Target:  5'- gGGGCUGGGugGGCggGGCCcacucggGCg -3'
miRNA:   3'- -CCUGGCCCugCUGggCCGGaaaua--UG- -5'
23796 3' -55.3 NC_005261.1 + 81377 0.66 0.921826
Target:  5'- cGGGCUcgcugGGGGCGccgggcuCCCGGCCUc----- -3'
miRNA:   3'- -CCUGG-----CCCUGCu------GGGCCGGAaauaug -5'
23796 3' -55.3 NC_005261.1 + 43359 0.66 0.921826
Target:  5'- gGGGCUGGugccgcugcGGCGGCaUCGGCCUcgcgGUGCc -3'
miRNA:   3'- -CCUGGCC---------CUGCUG-GGCCGGAaa--UAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.