miRNA display CGI


Results 1 - 20 of 720 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23796 5' -65.4 NC_005261.1 + 57395 0.66 0.499267
Target:  5'- uCGGgGaGCGcgcccgugauccgcGGCCG-GCGCCGCGAg -3'
miRNA:   3'- -GCCgC-CGCuu------------CCGGCgCGCGGCGCUg -5'
23796 5' -65.4 NC_005261.1 + 77226 0.66 0.498359
Target:  5'- cCGGgGGgGAGGaGCCagaGCGCaGCCG-GGCu -3'
miRNA:   3'- -GCCgCCgCUUC-CGG---CGCG-CGGCgCUG- -5'
23796 5' -65.4 NC_005261.1 + 128082 0.66 0.498359
Target:  5'- gGGCGaGCGAgcggguuaacGGGCgagcgGCGCGgCGCGGg -3'
miRNA:   3'- gCCGC-CGCU----------UCCGg----CGCGCgGCGCUg -5'
23796 5' -65.4 NC_005261.1 + 61100 0.66 0.498359
Target:  5'- uCGGCcGCcGAGaUCGCGCGCUGCGcCg -3'
miRNA:   3'- -GCCGcCGcUUCcGGCGCGCGGCGCuG- -5'
23796 5' -65.4 NC_005261.1 + 43686 0.66 0.498359
Target:  5'- gCGGCuccacGGCGAGGuccuggccuGCCaCGCGCUGCG-Cg -3'
miRNA:   3'- -GCCG-----CCGCUUC---------CGGcGCGCGGCGCuG- -5'
23796 5' -65.4 NC_005261.1 + 97968 0.66 0.498359
Target:  5'- uGGCGGCGGA-GCgGUGC-CCGgGGa -3'
miRNA:   3'- gCCGCCGCUUcCGgCGCGcGGCgCUg -5'
23796 5' -65.4 NC_005261.1 + 95035 0.66 0.498359
Target:  5'- cCGGCGGCGc---UCG-GCGCCGCaGACc -3'
miRNA:   3'- -GCCGCCGCuuccGGCgCGCGGCG-CUG- -5'
23796 5' -65.4 NC_005261.1 + 116072 0.66 0.498359
Target:  5'- uGGCGcgccgguccccGUGGAuGCCGCG-GuCCGCGACg -3'
miRNA:   3'- gCCGC-----------CGCUUcCGGCGCgC-GGCGCUG- -5'
23796 5' -65.4 NC_005261.1 + 18786 0.66 0.498359
Target:  5'- -aGCGGCGAGGguGCCG-GCuugaGCgGCGGCg -3'
miRNA:   3'- gcCGCCGCUUC--CGGCgCG----CGgCGCUG- -5'
23796 5' -65.4 NC_005261.1 + 119001 0.66 0.498359
Target:  5'- uCGG-GGCcugcuGGGCC-CGCGCCGaCGAa -3'
miRNA:   3'- -GCCgCCGcu---UCCGGcGCGCGGC-GCUg -5'
23796 5' -65.4 NC_005261.1 + 98659 0.66 0.498359
Target:  5'- uCGGCcccccaGGCGAGGGCgGgcucCGCCGgGGCc -3'
miRNA:   3'- -GCCG------CCGCUUCCGgCgc--GCGGCgCUG- -5'
23796 5' -65.4 NC_005261.1 + 136759 0.66 0.498359
Target:  5'- uCGGUGGUGAGGaGCU-CGUGCaGCGAg -3'
miRNA:   3'- -GCCGCCGCUUC-CGGcGCGCGgCGCUg -5'
23796 5' -65.4 NC_005261.1 + 30544 0.66 0.498359
Target:  5'- aGGacgaGGaaGAGGCCGcCGcCGCCGgGGCc -3'
miRNA:   3'- gCCg---CCgcUUCCGGC-GC-GCGGCgCUG- -5'
23796 5' -65.4 NC_005261.1 + 124924 0.66 0.497452
Target:  5'- -aGCcGCGGAGGCuccgccgCGCGCGCUGUGcCg -3'
miRNA:   3'- gcCGcCGCUUCCG-------GCGCGCGGCGCuG- -5'
23796 5' -65.4 NC_005261.1 + 21227 0.66 0.495639
Target:  5'- nCGGCGGgccCGucGGCUggcggcuuuucaggGCGUGCCGCaACg -3'
miRNA:   3'- -GCCGCC---GCuuCCGG--------------CGCGCGGCGcUG- -5'
23796 5' -65.4 NC_005261.1 + 23546 0.66 0.492926
Target:  5'- aGGCGGC-AGGaGCCGUcgcagguggggcaggGCugGCCGUGGCu -3'
miRNA:   3'- gCCGCCGcUUC-CGGCG---------------CG--CGGCGCUG- -5'
23796 5' -65.4 NC_005261.1 + 48673 0.66 0.489318
Target:  5'- gCGGCaacGGCGAcuacGGGcCCGCGgGCCaucacgcCGGCg -3'
miRNA:   3'- -GCCG---CCGCU----UCC-GGCGCgCGGc------GCUG- -5'
23796 5' -65.4 NC_005261.1 + 73761 0.66 0.489318
Target:  5'- aCGGCcgcuucuacgaGGCGcuGGCCugcgaCGUGCgCGCGGCg -3'
miRNA:   3'- -GCCG-----------CCGCuuCCGGc----GCGCG-GCGCUG- -5'
23796 5' -65.4 NC_005261.1 + 94871 0.66 0.489318
Target:  5'- aCGGCccgGGCGGGcGGcCCGCGUGCaGCcACa -3'
miRNA:   3'- -GCCG---CCGCUU-CC-GGCGCGCGgCGcUG- -5'
23796 5' -65.4 NC_005261.1 + 93797 0.66 0.489318
Target:  5'- gGGaCGccGCGcc-GCCGCGCGCCGCcGCc -3'
miRNA:   3'- gCC-GC--CGCuucCGGCGCGCGGCGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.