miRNA display CGI


Results 1 - 20 of 254 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 3' -55.6 NC_005261.1 + 68603 0.66 0.919191
Target:  5'- gAGCGgGgCCGaCGGCGUGGGGgaggauGCGCGc -3'
miRNA:   3'- gUCGUgCgGGC-GCUGUAUCUC------UGUGC- -5'
23797 3' -55.6 NC_005261.1 + 46072 0.66 0.919191
Target:  5'- gGGCGcCGCCuCGUGGCc---GGACACGa -3'
miRNA:   3'- gUCGU-GCGG-GCGCUGuaucUCUGUGC- -5'
23797 3' -55.6 NC_005261.1 + 107959 0.66 0.919191
Target:  5'- -uGCGCGgCCGCGGggcCAUGcAGugGCGg -3'
miRNA:   3'- guCGUGCgGGCGCU---GUAUcUCugUGC- -5'
23797 3' -55.6 NC_005261.1 + 120639 0.66 0.919191
Target:  5'- gCGGCccugUGCCUGCGGCGca-AGGCGCGg -3'
miRNA:   3'- -GUCGu---GCGGGCGCUGUaucUCUGUGC- -5'
23797 3' -55.6 NC_005261.1 + 95434 0.66 0.919191
Target:  5'- -cGCugGCCU-CGACGcAGAG-CACGg -3'
miRNA:   3'- guCGugCGGGcGCUGUaUCUCuGUGC- -5'
23797 3' -55.6 NC_005261.1 + 98675 0.66 0.919191
Target:  5'- gGGCGgGCuCCGCcggGGCc-GGAGGCGCGg -3'
miRNA:   3'- gUCGUgCG-GGCG---CUGuaUCUCUGUGC- -5'
23797 3' -55.6 NC_005261.1 + 15461 0.66 0.919191
Target:  5'- gAGCACGUgguucucgaCCGCGGC----GGACACGc -3'
miRNA:   3'- gUCGUGCG---------GGCGCUGuaucUCUGUGC- -5'
23797 3' -55.6 NC_005261.1 + 118441 0.66 0.919191
Target:  5'- -cGgACGCcgCCGCGGCGcUAGaAGACACu -3'
miRNA:   3'- guCgUGCG--GGCGCUGU-AUC-UCUGUGc -5'
23797 3' -55.6 NC_005261.1 + 64092 0.66 0.91862
Target:  5'- gUAGUugGCGCCCacaaaguGCGGCAcGGGcGGCACGu -3'
miRNA:   3'- -GUCG--UGCGGG-------CGCUGUaUCU-CUGUGC- -5'
23797 3' -55.6 NC_005261.1 + 108728 0.66 0.915729
Target:  5'- gAGCGCGCgggccagcggcggcgCCGCGGCGUccgcGGCGCGc -3'
miRNA:   3'- gUCGUGCG---------------GGCGCUGUAucu-CUGUGC- -5'
23797 3' -55.6 NC_005261.1 + 56445 0.66 0.915729
Target:  5'- gCGGCgGCGCaCCgcaacgcguaccacaGCGuCAUGGAGGCGCu -3'
miRNA:   3'- -GUCG-UGCG-GG---------------CGCuGUAUCUCUGUGc -5'
23797 3' -55.6 NC_005261.1 + 87610 0.66 0.913373
Target:  5'- cCGGCGaccaCCGCGACGUu-GGGCGCGa -3'
miRNA:   3'- -GUCGUgcg-GGCGCUGUAucUCUGUGC- -5'
23797 3' -55.6 NC_005261.1 + 71797 0.66 0.913373
Target:  5'- gAGCGCggcccgGCCCGUgggGACGUAG-GAgACGg -3'
miRNA:   3'- gUCGUG------CGGGCG---CUGUAUCuCUgUGC- -5'
23797 3' -55.6 NC_005261.1 + 48315 0.66 0.913373
Target:  5'- gGGCGCgucggGCCCG-GGCucGGGGGCGCGc -3'
miRNA:   3'- gUCGUG-----CGGGCgCUGuaUCUCUGUGC- -5'
23797 3' -55.6 NC_005261.1 + 39006 0.66 0.913373
Target:  5'- cCAGCGCGCCCaCG-CGcAGAGcgucCGCGa -3'
miRNA:   3'- -GUCGUGCGGGcGCuGUaUCUCu---GUGC- -5'
23797 3' -55.6 NC_005261.1 + 18535 0.66 0.913373
Target:  5'- aCGGCgGCGuCCCGCGGCccgcuGGGCACu -3'
miRNA:   3'- -GUCG-UGC-GGGCGCUGuauc-UCUGUGc -5'
23797 3' -55.6 NC_005261.1 + 58499 0.66 0.913373
Target:  5'- gCGGCcgcuuuugGCGCCCGCGuCcaGGAGGCGg- -3'
miRNA:   3'- -GUCG--------UGCGGGCGCuGuaUCUCUGUgc -5'
23797 3' -55.6 NC_005261.1 + 134960 0.66 0.913373
Target:  5'- gAGgGCGCCgGCGACGcAGAcGGCGa- -3'
miRNA:   3'- gUCgUGCGGgCGCUGUaUCU-CUGUgc -5'
23797 3' -55.6 NC_005261.1 + 136431 0.66 0.913373
Target:  5'- -cGCAgGCCCccucGCgGGCGUcgcAGGGGCACGc -3'
miRNA:   3'- guCGUgCGGG----CG-CUGUA---UCUCUGUGC- -5'
23797 3' -55.6 NC_005261.1 + 57655 0.66 0.913373
Target:  5'- gAGCACGCCCccgagacugcGCGAgcgccagcCGgcGGGGCACa -3'
miRNA:   3'- gUCGUGCGGG----------CGCU--------GUauCUCUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.