miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 75475 0.66 0.61058
Target:  5'- gCCGGGCGGCgGcgcgGGCCGCUacgagcgcgggGcGCUGn -3'
miRNA:   3'- gGGUUCGCCGgCa---CCGGCGG-----------CaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 70995 0.66 0.61058
Target:  5'- gCgCGGGCGGCCGccaGGCCagcucGCCGcGCa- -3'
miRNA:   3'- -GgGUUCGCCGGCa--CCGG-----CGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 64101 0.66 0.61058
Target:  5'- gCCCAcaaaguGCGGCaCG-GGCgGCaCGUGCc- -3'
miRNA:   3'- -GGGUu-----CGCCG-GCaCCGgCG-GCACGac -5'
23797 5' -62.8 NC_005261.1 + 3510 0.66 0.606657
Target:  5'- gCCAGcGCGGCCGccuccagcgcggcGGCCGCCucgGCg- -3'
miRNA:   3'- gGGUU-CGCCGGCa------------CCGGCGGca-CGac -5'
23797 5' -62.8 NC_005261.1 + 65464 0.66 0.600778
Target:  5'- gCUCGAGCGGCaUGUuugGGuuGCCGgGCg- -3'
miRNA:   3'- -GGGUUCGCCG-GCA---CCggCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 100715 0.66 0.600778
Target:  5'- gCCCGAgccGCGGCCGc-GCCGCgCGcGCg- -3'
miRNA:   3'- -GGGUU---CGCCGGCacCGGCG-GCaCGac -5'
23797 5' -62.8 NC_005261.1 + 82442 0.66 0.590997
Target:  5'- cCCCGGcCGGCCccGcGCCGCCGUuGCc- -3'
miRNA:   3'- -GGGUUcGCCGGcaC-CGGCGGCA-CGac -5'
23797 5' -62.8 NC_005261.1 + 15424 0.66 0.590997
Target:  5'- gCCCAgAGuCGGCCGggcgcgGGCCGgCGaUGgaGa -3'
miRNA:   3'- -GGGU-UC-GCCGGCa-----CCGGCgGC-ACgaC- -5'
23797 5' -62.8 NC_005261.1 + 121627 0.66 0.590997
Target:  5'- uCCCGccgcucGGCGGCC---GCCGCCGgcgagcgcggGCUGu -3'
miRNA:   3'- -GGGU------UCGCCGGcacCGGCGGCa---------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 118543 0.66 0.590997
Target:  5'- aCCCcuGCGGCgCGcgcgaGGaCGCCGUGCc- -3'
miRNA:   3'- -GGGuuCGCCG-GCa----CCgGCGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 12194 0.66 0.590997
Target:  5'- aCCAugcAGCGccgccGCCGgugccGCCGCCGcUGCUGc -3'
miRNA:   3'- gGGU---UCGC-----CGGCac---CGGCGGC-ACGAC- -5'
23797 5' -62.8 NC_005261.1 + 75035 0.66 0.590997
Target:  5'- aCCCuGGCGGCCGaccugcUGGCCaUgGUGUa- -3'
miRNA:   3'- -GGGuUCGCCGGC------ACCGGcGgCACGac -5'
23797 5' -62.8 NC_005261.1 + 1396 0.66 0.590997
Target:  5'- gCCGGGC-GCCGcGGCCGCgGcgGCg- -3'
miRNA:   3'- gGGUUCGcCGGCaCCGGCGgCa-CGac -5'
23797 5' -62.8 NC_005261.1 + 125741 0.66 0.590997
Target:  5'- gCCGcaaGGgGGCCGgggccagGGCUGCCGcggGCUc -3'
miRNA:   3'- gGGU---UCgCCGGCa------CCGGCGGCa--CGAc -5'
23797 5' -62.8 NC_005261.1 + 37648 0.66 0.590997
Target:  5'- cCCCAAGCccuuGGCCuUGGCCcCCGaGCc- -3'
miRNA:   3'- -GGGUUCG----CCGGcACCGGcGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 29699 0.66 0.590997
Target:  5'- aCguGGCGGCCugcGUGGCCaugaGCCGccGCUa -3'
miRNA:   3'- gGguUCGCCGG---CACCGG----CGGCa-CGAc -5'
23797 5' -62.8 NC_005261.1 + 106277 0.66 0.590997
Target:  5'- gCCGGGCGGcCCGUGcaaacGCCGUCGaccucgGCg- -3'
miRNA:   3'- gGGUUCGCC-GGCAC-----CGGCGGCa-----CGac -5'
23797 5' -62.8 NC_005261.1 + 44285 0.66 0.581244
Target:  5'- gCCCGccgccAGCGGCgGgccagGGCCGCUGcccGCg- -3'
miRNA:   3'- -GGGU-----UCGCCGgCa----CCGGCGGCa--CGac -5'
23797 5' -62.8 NC_005261.1 + 131219 0.66 0.581244
Target:  5'- gCCC--GCGuaCGUGGCCGCgCGcaucgagGCUGa -3'
miRNA:   3'- -GGGuuCGCcgGCACCGGCG-GCa------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 120575 0.66 0.581244
Target:  5'- cCCCGucaucgucAGC-GUCGUGGCCGUCGccUGCg- -3'
miRNA:   3'- -GGGU--------UCGcCGGCACCGGCGGC--ACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.