miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 29242 0.66 0.581244
Target:  5'- gCCGcGGC-GCCGcgcgacgGGCCGCCGccGCUGg -3'
miRNA:   3'- gGGU-UCGcCGGCa------CCGGCGGCa-CGAC- -5'
23797 5' -62.8 NC_005261.1 + 15424 0.66 0.590997
Target:  5'- gCCCAgAGuCGGCCGggcgcgGGCCGgCGaUGgaGa -3'
miRNA:   3'- -GGGU-UC-GCCGGCa-----CCGGCgGC-ACgaC- -5'
23797 5' -62.8 NC_005261.1 + 39370 0.66 0.571525
Target:  5'- cCUCAucGGCGGCCGgggagGGCgGCCcugGCg- -3'
miRNA:   3'- -GGGU--UCGCCGGCa----CCGgCGGca-CGac -5'
23797 5' -62.8 NC_005261.1 + 44285 0.66 0.581244
Target:  5'- gCCCGccgccAGCGGCgGgccagGGCCGCUGcccGCg- -3'
miRNA:   3'- -GGGU-----UCGCCGgCa----CCGGCGGCa--CGac -5'
23797 5' -62.8 NC_005261.1 + 131219 0.66 0.581244
Target:  5'- gCCC--GCGuaCGUGGCCGCgCGcaucgagGCUGa -3'
miRNA:   3'- -GGGuuCGCcgGCACCGGCG-GCa------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 23209 0.66 0.581244
Target:  5'- gCCCGcagcGGCGGCCGcGcGCaaaaGCCgGUGCa- -3'
miRNA:   3'- -GGGU----UCGCCGGCaC-CGg---CGG-CACGac -5'
23797 5' -62.8 NC_005261.1 + 121046 0.66 0.571525
Target:  5'- gCCAcacgucGCGGuuGUGGCgCGCgGUGUg- -3'
miRNA:   3'- gGGUu-----CGCCggCACCG-GCGgCACGac -5'
23797 5' -62.8 NC_005261.1 + 120575 0.66 0.581244
Target:  5'- cCCCGucaucgucAGC-GUCGUGGCCGUCGccUGCg- -3'
miRNA:   3'- -GGGU--------UCGcCGGCACCGGCGGC--ACGac -5'
23797 5' -62.8 NC_005261.1 + 117726 0.66 0.561845
Target:  5'- cCCgCAAGCGGCCGcgcgcugGcGCCGCCGc---- -3'
miRNA:   3'- -GG-GUUCGCCGGCa------C-CGGCGGCacgac -5'
23797 5' -62.8 NC_005261.1 + 79813 0.66 0.568616
Target:  5'- cCCCAacaugcgcgcGGCGGCgCGgcgGccagcgcagcgcuaGCCGCCGcGCUGg -3'
miRNA:   3'- -GGGU----------UCGCCG-GCa--C--------------CGGCGGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 75475 0.66 0.61058
Target:  5'- gCCGGGCGGCgGcgcgGGCCGCUacgagcgcgggGcGCUGn -3'
miRNA:   3'- gGGUUCGCCGgCa---CCGGCGG-----------CaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 10231 0.66 0.581244
Target:  5'- gCCCAGGCGGgcCCGcgcacucGCCGCCGcggGcCUGg -3'
miRNA:   3'- -GGGUUCGCC--GGCac-----CGGCGGCa--C-GAC- -5'
23797 5' -62.8 NC_005261.1 + 29310 0.66 0.58027
Target:  5'- gCCCGgcAGCGcGCCGccGCCGCCcggccgcGUGCg- -3'
miRNA:   3'- -GGGU--UCGC-CGGCacCGGCGG-------CACGac -5'
23797 5' -62.8 NC_005261.1 + 121910 0.66 0.581244
Target:  5'- gCUCGucuGCGcGCCGUGcGCCGCCacGCUc -3'
miRNA:   3'- -GGGUu--CGC-CGGCAC-CGGCGGcaCGAc -5'
23797 5' -62.8 NC_005261.1 + 38191 0.66 0.571525
Target:  5'- gCCUggGCGcGCCGcGGCgUGCUGcUGCUc -3'
miRNA:   3'- -GGGuuCGC-CGGCaCCG-GCGGC-ACGAc -5'
23797 5' -62.8 NC_005261.1 + 98743 0.66 0.571525
Target:  5'- gCCGcGCGGgCGuUGGCCGCgCGguugccGCUGc -3'
miRNA:   3'- gGGUuCGCCgGC-ACCGGCG-GCa-----CGAC- -5'
23797 5' -62.8 NC_005261.1 + 9102 0.66 0.561845
Target:  5'- cCUCAcguGGUGuGCCGagagGGCCGCCGgGaCUGg -3'
miRNA:   3'- -GGGU---UCGC-CGGCa---CCGGCGGCaC-GAC- -5'
23797 5' -62.8 NC_005261.1 + 79713 0.66 0.561845
Target:  5'- -gCGGGCGGCUGUagcagacGCCGCCGgGCg- -3'
miRNA:   3'- ggGUUCGCCGGCAc------CGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 97892 0.66 0.561845
Target:  5'- cCCCGggccGGCGGaCCGUcuGGgCGCCGgGCg- -3'
miRNA:   3'- -GGGU----UCGCC-GGCA--CCgGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 48767 0.66 0.561845
Target:  5'- cCCCGGGCGGCCcgacgagcucGGCgauCGCCG-GCUc -3'
miRNA:   3'- -GGGUUCGCCGGca--------CCG---GCGGCaCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.