miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 121910 0.66 0.581244
Target:  5'- gCUCGucuGCGcGCCGUGcGCCGCCacGCUc -3'
miRNA:   3'- -GGGUu--CGC-CGGCAC-CGGCGGcaCGAc -5'
23797 5' -62.8 NC_005261.1 + 39370 0.66 0.571525
Target:  5'- cCUCAucGGCGGCCGgggagGGCgGCCcugGCg- -3'
miRNA:   3'- -GGGU--UCGCCGGCa----CCGgCGGca-CGac -5'
23797 5' -62.8 NC_005261.1 + 44285 0.66 0.581244
Target:  5'- gCCCGccgccAGCGGCgGgccagGGCCGCUGcccGCg- -3'
miRNA:   3'- -GGGU-----UCGCCGgCa----CCGGCGGCa--CGac -5'
23797 5' -62.8 NC_005261.1 + 117726 0.66 0.561845
Target:  5'- cCCgCAAGCGGCCGcgcgcugGcGCCGCCGc---- -3'
miRNA:   3'- -GG-GUUCGCCGGCa------C-CGGCGGCacgac -5'
23797 5' -62.8 NC_005261.1 + 10231 0.66 0.581244
Target:  5'- gCCCAGGCGGgcCCGcgcacucGCCGCCGcggGcCUGg -3'
miRNA:   3'- -GGGUUCGCC--GGCac-----CGGCGGCa--C-GAC- -5'
23797 5' -62.8 NC_005261.1 + 1396 0.66 0.590997
Target:  5'- gCCGGGC-GCCGcGGCCGCgGcgGCg- -3'
miRNA:   3'- gGGUUCGcCGGCaCCGGCGgCa-CGac -5'
23797 5' -62.8 NC_005261.1 + 29699 0.66 0.590997
Target:  5'- aCguGGCGGCCugcGUGGCCaugaGCCGccGCUa -3'
miRNA:   3'- gGguUCGCCGG---CACCGG----CGGCa-CGAc -5'
23797 5' -62.8 NC_005261.1 + 131219 0.66 0.581244
Target:  5'- gCCC--GCGuaCGUGGCCGCgCGcaucgagGCUGa -3'
miRNA:   3'- -GGGuuCGCcgGCACCGGCG-GCa------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 121046 0.66 0.571525
Target:  5'- gCCAcacgucGCGGuuGUGGCgCGCgGUGUg- -3'
miRNA:   3'- gGGUu-----CGCCggCACCG-GCGgCACGac -5'
23797 5' -62.8 NC_005261.1 + 125741 0.66 0.590997
Target:  5'- gCCGcaaGGgGGCCGgggccagGGCUGCCGcggGCUc -3'
miRNA:   3'- gGGU---UCgCCGGCa------CCGGCGGCa--CGAc -5'
23797 5' -62.8 NC_005261.1 + 75475 0.66 0.61058
Target:  5'- gCCGGGCGGCgGcgcgGGCCGCUacgagcgcgggGcGCUGn -3'
miRNA:   3'- gGGUUCGCCGgCa---CCGGCGG-----------CaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 100715 0.66 0.600778
Target:  5'- gCCCGAgccGCGGCCGc-GCCGCgCGcGCg- -3'
miRNA:   3'- -GGGUU---CGCCGGCacCGGCG-GCaCGac -5'
23797 5' -62.8 NC_005261.1 + 64101 0.66 0.61058
Target:  5'- gCCCAcaaaguGCGGCaCG-GGCgGCaCGUGCc- -3'
miRNA:   3'- -GGGUu-----CGCCG-GCaCCGgCG-GCACGac -5'
23797 5' -62.8 NC_005261.1 + 37648 0.66 0.590997
Target:  5'- cCCCAAGCccuuGGCCuUGGCCcCCGaGCc- -3'
miRNA:   3'- -GGGUUCG----CCGGcACCGGcGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 12194 0.66 0.590997
Target:  5'- aCCAugcAGCGccgccGCCGgugccGCCGCCGcUGCUGc -3'
miRNA:   3'- gGGU---UCGC-----CGGCac---CGGCGGC-ACGAC- -5'
23797 5' -62.8 NC_005261.1 + 120575 0.66 0.581244
Target:  5'- cCCCGucaucgucAGC-GUCGUGGCCGUCGccUGCg- -3'
miRNA:   3'- -GGGU--------UCGcCGGCACCGGCGGC--ACGac -5'
23797 5' -62.8 NC_005261.1 + 17544 0.67 0.523628
Target:  5'- aCUggGCGGCgCG-GGcCCGCCGUucgGCg- -3'
miRNA:   3'- gGGuuCGCCG-GCaCC-GGCGGCA---CGac -5'
23797 5' -62.8 NC_005261.1 + 125801 0.67 0.55221
Target:  5'- aCgGGGCuugGGCCGgGGCCGCCGcgaGCg- -3'
miRNA:   3'- gGgUUCG---CCGGCaCCGGCGGCa--CGac -5'
23797 5' -62.8 NC_005261.1 + 75200 0.67 0.504891
Target:  5'- aCCUucauGGCGGCCGcGGUgGCgGcGCUGc -3'
miRNA:   3'- -GGGu---UCGCCGGCaCCGgCGgCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 16233 0.67 0.519859
Target:  5'- gCCCucggGGCGGUCGacguccgcgccggGGCCGCCGgggccggGCUu -3'
miRNA:   3'- -GGGu---UCGCCGGCa------------CCGGCGGCa------CGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.