Results 41 - 60 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 13193 | 0.67 | 0.523628 |
Target: 5'- uCCCAGGCcuccaCGUGGCCGuuGUaCUGc -3' miRNA: 3'- -GGGUUCGccg--GCACCGGCggCAcGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 28749 | 0.67 | 0.523628 |
Target: 5'- cCCCAGaggacgccGCGGCCGggggcgccugGGCCGCgGcGCg- -3' miRNA: 3'- -GGGUU--------CGCCGGCa---------CCGGCGgCaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 69509 | 0.67 | 0.523628 |
Target: 5'- gCC-GGCGGCg--GGCUGCCGgaGCUGg -3' miRNA: 3'- gGGuUCGCCGgcaCCGGCGGCa-CGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 116713 | 0.67 | 0.533097 |
Target: 5'- gCCGccAGCuGGCCGacgucGCCGCCcUGCUGa -3' miRNA: 3'- gGGU--UCG-CCGGCac---CGGCGGcACGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 129698 | 0.67 | 0.533097 |
Target: 5'- gCCgGGGCcggGGCCGgaggcaGGcCCGCCG-GCUGc -3' miRNA: 3'- -GGgUUCG---CCGGCa-----CC-GGCGGCaCGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 74688 | 0.67 | 0.533097 |
Target: 5'- aCCGcGCGGgaGcUGGCCGCCGcGCg- -3' miRNA: 3'- gGGUuCGCCggC-ACCGGCGGCaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 120010 | 0.67 | 0.514225 |
Target: 5'- gCUAcGCGGCCGUGugccgcGCCGCCGaGUa- -3' miRNA: 3'- gGGUuCGCCGGCAC------CGGCGGCaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 16233 | 0.67 | 0.519859 |
Target: 5'- gCCCucggGGCGGUCGacguccgcgccggGGCCGCCGgggccggGCUu -3' miRNA: 3'- -GGGu---UCGCCGGCa------------CCGGCGGCa------CGAc -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 38263 | 0.67 | 0.514225 |
Target: 5'- gCCAgccugggcugggGGCGGCUG-GuGCaCGCgGUGCUGg -3' miRNA: 3'- gGGU------------UCGCCGGCaC-CG-GCGgCACGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 81418 | 0.67 | 0.495631 |
Target: 5'- cCCCAggcacaGGCGGCguCGUcGGCCGCCccGCg- -3' miRNA: 3'- -GGGU------UCGCCG--GCA-CCGGCGGcaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 100072 | 0.67 | 0.55221 |
Target: 5'- gCCCGggGGCGcGCCGcgccccucGCCGCCGccGCUGc -3' miRNA: 3'- -GGGU--UCGC-CGGCac------CGGCGGCa-CGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 75200 | 0.67 | 0.504891 |
Target: 5'- aCCUucauGGCGGCCGcGGUgGCgGcGCUGc -3' miRNA: 3'- -GGGu---UCGCCGGCaCCGgCGgCaCGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 125801 | 0.67 | 0.55221 |
Target: 5'- aCgGGGCuugGGCCGgGGCCGCCGcgaGCg- -3' miRNA: 3'- gGgUUCG---CCGGCaCCGGCGGCa--CGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 23587 | 0.67 | 0.55221 |
Target: 5'- gCUCAuGGCGGCgGUGGUgguggcuguCGCCGccGCUGc -3' miRNA: 3'- -GGGU-UCGCCGgCACCG---------GCGGCa-CGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 103781 | 0.67 | 0.504891 |
Target: 5'- aCCCAGGCcgcgGGCCGUcuucGGUgugCGCCGuUGCg- -3' miRNA: 3'- -GGGUUCG----CCGGCA----CCG---GCGGC-ACGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 104515 | 0.67 | 0.504891 |
Target: 5'- uCCguGGCGGCCGcgacggcGGCCGCCaccagGCg- -3' miRNA: 3'- -GGguUCGCCGGCa------CCGGCGGca---CGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 16307 | 0.67 | 0.514225 |
Target: 5'- gCCCAgcGGCGGCCG-GGCCcucccccucgccGCCGgucucCUGc -3' miRNA: 3'- -GGGU--UCGCCGGCaCCGG------------CGGCac---GAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 31105 | 0.67 | 0.514225 |
Target: 5'- gCCC-GGCGGCCcc-GCCGCCGacgGCg- -3' miRNA: 3'- -GGGuUCGCCGGcacCGGCGGCa--CGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 68755 | 0.67 | 0.514225 |
Target: 5'- gCCCGccGGgGcGCCGcgGaGCCGCCGUGUc- -3' miRNA: 3'- -GGGU--UCgC-CGGCa-C-CGGCGGCACGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 21771 | 0.67 | 0.495631 |
Target: 5'- gCCGGGCGaGCCGccgcggcgcgGGCCGCCGcaGCc- -3' miRNA: 3'- gGGUUCGC-CGGCa---------CCGGCGGCa-CGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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