miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 84578 0.67 0.542625
Target:  5'- cCCCGuAGaCGGCCGUcugcgccaGCgCGCCGuUGCUGc -3'
miRNA:   3'- -GGGU-UC-GCCGGCAc-------CG-GCGGC-ACGAC- -5'
23797 5' -62.8 NC_005261.1 + 70811 0.67 0.542625
Target:  5'- gUCCGcgccGGCGGCCccgGGCgCGCCG-GCg- -3'
miRNA:   3'- -GGGU----UCGCCGGca-CCG-GCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 3672 0.67 0.542625
Target:  5'- gCC--GCGGCCGgcaGGCCGCgGcccGCUGc -3'
miRNA:   3'- gGGuuCGCCGGCa--CCGGCGgCa--CGAC- -5'
23797 5' -62.8 NC_005261.1 + 74688 0.67 0.533097
Target:  5'- aCCGcGCGGgaGcUGGCCGCCGcGCg- -3'
miRNA:   3'- gGGUuCGCCggC-ACCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 129698 0.67 0.533097
Target:  5'- gCCgGGGCcggGGCCGgaggcaGGcCCGCCG-GCUGc -3'
miRNA:   3'- -GGgUUCG---CCGGCa-----CC-GGCGGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 116713 0.67 0.533097
Target:  5'- gCCGccAGCuGGCCGacgucGCCGCCcUGCUGa -3'
miRNA:   3'- gGGU--UCG-CCGGCac---CGGCGGcACGAC- -5'
23797 5' -62.8 NC_005261.1 + 2784 0.67 0.523628
Target:  5'- cCCCGAGgGGCU---GCCGCCG-GCg- -3'
miRNA:   3'- -GGGUUCgCCGGcacCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 83837 0.67 0.523628
Target:  5'- aUCCGcuGGCgGGCCGcGGCCccGCUGgGCUGg -3'
miRNA:   3'- -GGGU--UCG-CCGGCaCCGG--CGGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 42909 0.67 0.523628
Target:  5'- aCCC-GGCGcuCCGgGGCCGCCGgGCg- -3'
miRNA:   3'- -GGGuUCGCc-GGCaCCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 17544 0.67 0.523628
Target:  5'- aCUggGCGGCgCG-GGcCCGCCGUucgGCg- -3'
miRNA:   3'- gGGuuCGCCG-GCaCC-GGCGGCA---CGac -5'
23797 5' -62.8 NC_005261.1 + 16233 0.67 0.519859
Target:  5'- gCCCucggGGCGGUCGacguccgcgccggGGCCGCCGgggccggGCUu -3'
miRNA:   3'- -GGGu---UCGCCGGCa------------CCGGCGGCa------CGAc -5'
23797 5' -62.8 NC_005261.1 + 28749 0.67 0.523628
Target:  5'- cCCCAGaggacgccGCGGCCGggggcgccugGGCCGCgGcGCg- -3'
miRNA:   3'- -GGGUU--------CGCCGGCa---------CCGGCGgCaCGac -5'
23797 5' -62.8 NC_005261.1 + 13193 0.67 0.523628
Target:  5'- uCCCAGGCcuccaCGUGGCCGuuGUaCUGc -3'
miRNA:   3'- -GGGUUCGccg--GCACCGGCggCAcGAC- -5'
23797 5' -62.8 NC_005261.1 + 103369 0.68 0.468333
Target:  5'- cCCCAGcuCGGCCGcGcGCCGCCGcGCc- -3'
miRNA:   3'- -GGGUUc-GCCGGCaC-CGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 66924 0.68 0.471029
Target:  5'- gCCCAggagggcgucgaaGGCGGCCGcguacaGGCCGuuGUcguccgaccgcaccuGCUGg -3'
miRNA:   3'- -GGGU-------------UCGCCGGCa-----CCGGCggCA---------------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 101576 0.68 0.477349
Target:  5'- gCUCGGcGCGcGCCGUGGCCuCCGcGCg- -3'
miRNA:   3'- -GGGUU-CGC-CGGCACCGGcGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 125696 0.68 0.477349
Target:  5'- gCCGGGCuuGGcCCGgcgacGGCCGCCGcgggcucgGCUGg -3'
miRNA:   3'- gGGUUCG--CC-GGCa----CCGGCGGCa-------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 30757 0.68 0.477349
Target:  5'- gCCCGGGCccuaguccgGGCCGgagcccGGCCGCggcgguggagGUGCUGg -3'
miRNA:   3'- -GGGUUCG---------CCGGCa-----CCGGCGg---------CACGAC- -5'
23797 5' -62.8 NC_005261.1 + 102677 0.68 0.485535
Target:  5'- gCCCAGcgccgcguccgccGCGGCCGUcgcuGCCGCCGU-CUc -3'
miRNA:   3'- -GGGUU-------------CGCCGGCAc---CGGCGGCAcGAc -5'
23797 5' -62.8 NC_005261.1 + 74120 0.68 0.486449
Target:  5'- aCCC-GGUGGUCcUGG-CGCCgGUGCUGg -3'
miRNA:   3'- -GGGuUCGCCGGcACCgGCGG-CACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.