miRNA display CGI


Results 101 - 120 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 43413 0.69 0.433182
Target:  5'- gCCGggGGCGGCCuccGCCGCCGgcggggaGCUGg -3'
miRNA:   3'- gGGU--UCGCCGGcacCGGCGGCa------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 5510 0.69 0.424636
Target:  5'- gCCGcggcAGCGGCgGcgaGGCCGCCG-GCUu -3'
miRNA:   3'- gGGU----UCGCCGgCa--CCGGCGGCaCGAc -5'
23797 5' -62.8 NC_005261.1 + 107301 0.69 0.424636
Target:  5'- cUCCGccGCGGCCacGGCCGCCGcgUGCa- -3'
miRNA:   3'- -GGGUu-CGCCGGcaCCGGCGGC--ACGac -5'
23797 5' -62.8 NC_005261.1 + 38356 0.69 0.424636
Target:  5'- gCCCAgcgggccuuuggGGCGGCCGggaagcGGCaCcUCGUGCUGa -3'
miRNA:   3'- -GGGU------------UCGCCGGCa-----CCG-GcGGCACGAC- -5'
23797 5' -62.8 NC_005261.1 + 104702 0.69 0.399614
Target:  5'- cCCCGaagAGCGGCUGgacggccgagGGCgCGUCGUGCc- -3'
miRNA:   3'- -GGGU---UCGCCGGCa---------CCG-GCGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 2234 0.7 0.345034
Target:  5'- gCCCGccgcgcaccGGCGGCCacucaGGCCGCCG-GCg- -3'
miRNA:   3'- -GGGU---------UCGCCGGca---CCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 133838 0.7 0.383466
Target:  5'- gCCGcguGCGcGCCGUGGCCGgCGcGCg- -3'
miRNA:   3'- gGGUu--CGC-CGGCACCGGCgGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 60408 0.7 0.345034
Target:  5'- gCCGGGcCGGcCCGggcccggGGCCGCCGcGCUc -3'
miRNA:   3'- gGGUUC-GCC-GGCa------CCGGCGGCaCGAc -5'
23797 5' -62.8 NC_005261.1 + 6421 0.7 0.351744
Target:  5'- gCCCGgccugcucgcgagGGCGGuCCGggGGCCGgCCGgGCUGc -3'
miRNA:   3'- -GGGU-------------UCGCC-GGCa-CCGGC-GGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 8790 0.7 0.383466
Target:  5'- cCCCucGGCGGCUGcaGCCGCCGaggGCUu -3'
miRNA:   3'- -GGGu-UCGCCGGCacCGGCGGCa--CGAc -5'
23797 5' -62.8 NC_005261.1 + 91130 0.7 0.383466
Target:  5'- gCC--GCGGCCGaGGCCucaGCCGUGCc- -3'
miRNA:   3'- gGGuuCGCCGGCaCCGG---CGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 102220 0.7 0.383466
Target:  5'- aCgCAAGCacGGCCucgaUGGCCGCCGUcgcccGCUGc -3'
miRNA:   3'- -GgGUUCG--CCGGc---ACCGGCGGCA-----CGAC- -5'
23797 5' -62.8 NC_005261.1 + 53654 0.7 0.375556
Target:  5'- uCgCAGGCGGCC-UGGCCGCgGgucGCg- -3'
miRNA:   3'- -GgGUUCGCCGGcACCGGCGgCa--CGac -5'
23797 5' -62.8 NC_005261.1 + 138035 0.7 0.360069
Target:  5'- gCCC-GGCGGCgGUGGCgGCgGUgGCg- -3'
miRNA:   3'- -GGGuUCGCCGgCACCGgCGgCA-CGac -5'
23797 5' -62.8 NC_005261.1 + 364 0.7 0.360069
Target:  5'- gCCC-GGCGGCgGUGGCgGCgGUgGCg- -3'
miRNA:   3'- -GGGuUCGCCGgCACCGgCGgCA-CGac -5'
23797 5' -62.8 NC_005261.1 + 107820 0.7 0.352495
Target:  5'- gCCCuAGCGGCCGccGCCGCCucUGCc- -3'
miRNA:   3'- -GGGuUCGCCGGCacCGGCGGc-ACGac -5'
23797 5' -62.8 NC_005261.1 + 1750 0.7 0.352495
Target:  5'- gCCCAGGCG--CGUGGCCaCCGUGUa- -3'
miRNA:   3'- -GGGUUCGCcgGCACCGGcGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 118052 0.7 0.350245
Target:  5'- gCCCGcgcuGGCGGCCGcGGCagcgGCCGcagccgcgcucgucUGCUGg -3'
miRNA:   3'- -GGGU----UCGCCGGCaCCGg---CGGC--------------ACGAC- -5'
23797 5' -62.8 NC_005261.1 + 65529 0.71 0.316335
Target:  5'- aCCCAGcGCGGCCGcgcgGGCagcaGCgCGUGCc- -3'
miRNA:   3'- -GGGUU-CGCCGGCa---CCGg---CG-GCACGac -5'
23797 5' -62.8 NC_005261.1 + 32211 0.71 0.315641
Target:  5'- gCCCGAcgagcugccggccGCGGCgGUGGCCuucugcgcgGCCGcgcUGCUGg -3'
miRNA:   3'- -GGGUU-------------CGCCGgCACCGG---------CGGC---ACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.