Results 1 - 20 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 74811 | 0.83 | 0.049995 |
Target: 5'- gCCCGcguGGCGGagGUGGCCGCCGUGCUc -3' miRNA: 3'- -GGGU---UCGCCggCACCGGCGGCACGAc -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 53520 | 0.8 | 0.075626 |
Target: 5'- gCCCGAa-GGCUGUGGCUGCCGUGUUGc -3' miRNA: 3'- -GGGUUcgCCGGCACCGGCGGCACGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 31819 | 0.79 | 0.088177 |
Target: 5'- gCCUGAGCGGCgCGcgcUGGCgcgCGCCGUGCUGg -3' miRNA: 3'- -GGGUUCGCCG-GC---ACCG---GCGGCACGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 7663 | 0.79 | 0.100125 |
Target: 5'- uUCAAGCGGCCGcGGCCGCCGccUGUg- -3' miRNA: 3'- gGGUUCGCCGGCaCCGGCGGC--ACGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 47615 | 0.79 | 0.100125 |
Target: 5'- cCCCugcggGGGCGGCCGcGGCCGCCGcGCg- -3' miRNA: 3'- -GGG-----UUCGCCGGCaCCGGCGGCaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 31450 | 0.78 | 0.114737 |
Target: 5'- gCCCGgcgaggacgagcgccGGCGGCCugaGUGGCCGCCgGUGCg- -3' miRNA: 3'- -GGGU---------------UCGCCGG---CACCGGCGG-CACGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 42667 | 0.78 | 0.116478 |
Target: 5'- gCCAagcGGCGGCCG-GGCCGCCGccgGCa- -3' miRNA: 3'- gGGU---UCGCCGGCaCCGGCGGCa--CGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 51789 | 0.78 | 0.116478 |
Target: 5'- gCCCu-GCuGGCCGUGGCCauGCuCGUGCUGc -3' miRNA: 3'- -GGGuuCG-CCGGCACCGG--CG-GCACGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 113564 | 0.77 | 0.128731 |
Target: 5'- aCCGcgagcAGUGGUCgGUGGCCGCCGcGCUGg -3' miRNA: 3'- gGGU-----UCGCCGG-CACCGGCGGCaCGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 28844 | 0.77 | 0.128731 |
Target: 5'- gCUgAGGCGGCCGUcguGGCCGCCGcccuugagGCUGc -3' miRNA: 3'- -GGgUUCGCCGGCA---CCGGCGGCa-------CGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 68862 | 0.77 | 0.122462 |
Target: 5'- gCCCucugccGCGGCUGUGcGCCGUCGUGCg- -3' miRNA: 3'- -GGGuu----CGCCGGCAC-CGGCGGCACGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 135580 | 0.76 | 0.14572 |
Target: 5'- cCCCAucGUGGCCacGGCCggcGCCGUGCUGg -3' miRNA: 3'- -GGGUu-CGCCGGcaCCGG---CGGCACGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 132052 | 0.76 | 0.152696 |
Target: 5'- cCCCGgggagguGGCGGCCGaggucgcGGCCGCCGUcgccGCUGc -3' miRNA: 3'- -GGGU-------UCGCCGGCa------CCGGCGGCA----CGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 121766 | 0.75 | 0.190463 |
Target: 5'- gCCCGAGCgcggugggguGGCCGcGGCCGgCGgGCUGg -3' miRNA: 3'- -GGGUUCG----------CCGGCaCCGGCgGCaCGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 91168 | 0.74 | 0.218111 |
Target: 5'- gCCCGGGCGgcagcucccGCCG-GGCuucgcgcgcuucggCGCCGUGCUGg -3' miRNA: 3'- -GGGUUCGC---------CGGCaCCG--------------GCGGCACGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 23883 | 0.74 | 0.214539 |
Target: 5'- cCCCGGGCgGGCCGgcuagggugGGCuCGCUGgGCUGg -3' miRNA: 3'- -GGGUUCG-CCGGCa--------CCG-GCGGCaCGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 51437 | 0.74 | 0.209524 |
Target: 5'- cCCCGGGCGcGCCGUgaugaucaaccuGGCCGgCGgucUGCUGg -3' miRNA: 3'- -GGGUUCGC-CGGCA------------CCGGCgGC---ACGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 3441 | 0.74 | 0.199795 |
Target: 5'- gUCCAGGCGGgCGcgcgGGCCGCCGcGCc- -3' miRNA: 3'- -GGGUUCGCCgGCa---CCGGCGGCaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 91477 | 0.74 | 0.196954 |
Target: 5'- uCCCAgcGGCGccGCCGcGGCCGCCGcccgccccgcgcgccUGCUGg -3' miRNA: 3'- -GGGU--UCGC--CGGCaCCGGCGGC---------------ACGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 51249 | 0.73 | 0.235641 |
Target: 5'- cUCCAGGCGGCCGU-GCUGCU--GCUGu -3' miRNA: 3'- -GGGUUCGCCGGCAcCGGCGGcaCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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