Results 21 - 40 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 34336 | 0.73 | 0.252588 |
Target: 5'- cCCCAAGgGGCCGgGGCgGCCGacgggGCc- -3' miRNA: 3'- -GGGUUCgCCGGCaCCGgCGGCa----CGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 105119 | 0.73 | 0.24683 |
Target: 5'- gCCCGcGCGGgCGcgGGCCGCCG-GCg- -3' miRNA: 3'- -GGGUuCGCCgGCa-CCGGCGGCaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 30189 | 0.73 | 0.241181 |
Target: 5'- gCCgAGGCGGCCGccgcgcuggaGGCgGCCGcGCUGg -3' miRNA: 3'- -GGgUUCGCCGGCa---------CCGgCGGCaCGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 23826 | 0.73 | 0.241181 |
Target: 5'- cCCCGGGCgGGCCGgcuagggugGGCuCGCCGgggcaggccgGCUGg -3' miRNA: 3'- -GGGUUCG-CCGGCa--------CCG-GCGGCa---------CGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 23769 | 0.73 | 0.241181 |
Target: 5'- cCCCGGGCgGGCCGgcuagggugGGCuCGCCGgggcaggccgGCUGg -3' miRNA: 3'- -GGGUUCG-CCGGCa--------CCG-GCGGCa---------CGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 75515 | 0.73 | 0.235641 |
Target: 5'- --gAGGCGcacGCCGUGGUCGCCGcGCUGc -3' miRNA: 3'- gggUUCGC---CGGCACCGGCGGCaCGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 51249 | 0.73 | 0.235641 |
Target: 5'- cUCCAGGCGGCCGU-GCUGCU--GCUGu -3' miRNA: 3'- -GGGUUCGCCGGCAcCGGCGGcaCGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 114345 | 0.73 | 0.230207 |
Target: 5'- gCUCGAGCGGCgCGUGGCCGCg--GCc- -3' miRNA: 3'- -GGGUUCGCCG-GCACCGGCGgcaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 12710 | 0.72 | 0.289473 |
Target: 5'- gCCCGAGCGGCuCGggcgcgcgGGcCCGCCG-GCc- -3' miRNA: 3'- -GGGUUCGCCG-GCa-------CC-GGCGGCaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 55447 | 0.72 | 0.283044 |
Target: 5'- cUCCGAGCGGCgCGgugGGCCaGUCGUcGCUu -3' miRNA: 3'- -GGGUUCGCCG-GCa--CCGG-CGGCA-CGAc -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 87067 | 0.72 | 0.276728 |
Target: 5'- gCCAccGCGGCCG-GGCCcagcacguaGCCGUGCa- -3' miRNA: 3'- gGGUu-CGCCGGCaCCGG---------CGGCACGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 131860 | 0.72 | 0.276728 |
Target: 5'- gUCCAAGCGGCUGcuugagcuggcGGCCGCCGccGCa- -3' miRNA: 3'- -GGGUUCGCCGGCa----------CCGGCGGCa-CGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 38932 | 0.72 | 0.270525 |
Target: 5'- gCCAagccGGCGGCCGggcgGGCCGCgGcgcgcggGCUGc -3' miRNA: 3'- gGGU----UCGCCGGCa---CCGGCGgCa------CGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 2607 | 0.72 | 0.270525 |
Target: 5'- gCCGucGGCGGCgG-GGCCGCCGgGCg- -3' miRNA: 3'- gGGU--UCGCCGgCaCCGGCGGCaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 35954 | 0.72 | 0.269911 |
Target: 5'- gCCCGAGCccggccaGGCCGcucGGCCGCUGUaGCg- -3' miRNA: 3'- -GGGUUCG-------CCGGCa--CCGGCGGCA-CGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 116006 | 0.72 | 0.258456 |
Target: 5'- gCCCgAGGCGGCC-UGaGCCGCCGacgGCg- -3' miRNA: 3'- -GGG-UUCGCCGGcAC-CGGCGGCa--CGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 53566 | 0.71 | 0.296017 |
Target: 5'- gCCCAggcgcacuAGCGGCCGcgGGCCGgCG-GCg- -3' miRNA: 3'- -GGGU--------UCGCCGGCa-CCGGCgGCaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 70861 | 0.71 | 0.302004 |
Target: 5'- gUCCAgGGCGGCCGccguggcgUGGCCggcggugcacaugGCCGUGCa- -3' miRNA: 3'- -GGGU-UCGCCGGC--------ACCGG-------------CGGCACGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 31053 | 0.71 | 0.302004 |
Target: 5'- cCCCAGcGCGGCgG-GaGCCGCCGcugcccgcccgcgUGCUGg -3' miRNA: 3'- -GGGUU-CGCCGgCaC-CGGCGGC-------------ACGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 135308 | 0.71 | 0.302675 |
Target: 5'- aCC-GGCGuGUCGcccugGGCgGCCGUGCUGg -3' miRNA: 3'- gGGuUCGC-CGGCa----CCGgCGGCACGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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