miRNA display CGI


Results 81 - 100 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 74120 0.68 0.486449
Target:  5'- aCCC-GGUGGUCcUGG-CGCCgGUGCUGg -3'
miRNA:   3'- -GGGuUCGCCGGcACCgGCGG-CACGAC- -5'
23797 5' -62.8 NC_005261.1 + 103369 0.68 0.468333
Target:  5'- cCCCAGcuCGGCCGcGcGCCGCCGcGCc- -3'
miRNA:   3'- -GGGUUc-GCCGGCaC-CGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 88777 0.68 0.468333
Target:  5'- cUCCu--CGGCCcUGGCCGCCG-GCg- -3'
miRNA:   3'- -GGGuucGCCGGcACCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 39791 0.68 0.441827
Target:  5'- gCCGGGgGGCgGcgcGGCCGCCG-GCg- -3'
miRNA:   3'- gGGUUCgCCGgCa--CCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 96137 0.68 0.441827
Target:  5'- aCCUGcggcGGCGGCaCGagaaGGCCGUCGUGCc- -3'
miRNA:   3'- -GGGU----UCGCCG-GCa---CCGGCGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 44007 0.68 0.441827
Target:  5'- uCCCAGcccggcuucggcGCGGCgGgcGGCCGCCGcGCg- -3'
miRNA:   3'- -GGGUU------------CGCCGgCa-CCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 30894 0.68 0.450569
Target:  5'- gCCCGAGCucgGGCUGgGGCCGcCCG-GCc- -3'
miRNA:   3'- -GGGUUCG---CCGGCaCCGGC-GGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 10473 0.68 0.454092
Target:  5'- gCCCGAGCaGGCCGgcccgcugcaccggcUuuugcgcgcGGCCGCCGcUGCg- -3'
miRNA:   3'- -GGGUUCG-CCGGC---------------A---------CCGGCGGC-ACGac -5'
23797 5' -62.8 NC_005261.1 + 39866 0.68 0.459405
Target:  5'- gCCCAGGCacacGGCCagcaGGCCGCgCGcgcgGCUGu -3'
miRNA:   3'- -GGGUUCG----CCGGca--CCGGCG-GCa---CGAC- -5'
23797 5' -62.8 NC_005261.1 + 90767 0.68 0.459405
Target:  5'- cCCCgAGGCcGCCGaGGCCGCUGcgGCg- -3'
miRNA:   3'- -GGG-UUCGcCGGCaCCGGCGGCa-CGac -5'
23797 5' -62.8 NC_005261.1 + 98139 0.68 0.459405
Target:  5'- aCC-GGCGGCCGUcggcggcaaGGCCGCgGgcgGCg- -3'
miRNA:   3'- gGGuUCGCCGGCA---------CCGGCGgCa--CGac -5'
23797 5' -62.8 NC_005261.1 + 99467 0.68 0.468333
Target:  5'- aCCCGcGGCGGCgcUGGCCGCUGcgGCc- -3'
miRNA:   3'- -GGGU-UCGCCGgcACCGGCGGCa-CGac -5'
23797 5' -62.8 NC_005261.1 + 50949 0.67 0.504891
Target:  5'- uUCUAcGCGGCCGUGGUCGacuaCG-GCg- -3'
miRNA:   3'- -GGGUuCGCCGGCACCGGCg---GCaCGac -5'
23797 5' -62.8 NC_005261.1 + 75200 0.67 0.504891
Target:  5'- aCCUucauGGCGGCCGcGGUgGCgGcGCUGc -3'
miRNA:   3'- -GGGu---UCGCCGGCaCCGgCGgCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 132948 0.67 0.495631
Target:  5'- cCCCGAGCGcugcGCCGacgUGGCCGCCuucGUcGCc- -3'
miRNA:   3'- -GGGUUCGC----CGGC---ACCGGCGG---CA-CGac -5'
23797 5' -62.8 NC_005261.1 + 98665 0.67 0.495631
Target:  5'- cCCCAGGCGagggcgggcuccGCCGgGGCCggaggcgcgGCCGgaGCUGg -3'
miRNA:   3'- -GGGUUCGC------------CGGCaCCGG---------CGGCa-CGAC- -5'
23797 5' -62.8 NC_005261.1 + 81418 0.67 0.495631
Target:  5'- cCCCAggcacaGGCGGCguCGUcGGCCGCCccGCg- -3'
miRNA:   3'- -GGGU------UCGCCG--GCA-CCGGCGGcaCGac -5'
23797 5' -62.8 NC_005261.1 + 44244 0.67 0.495631
Target:  5'- gCCCAGcgcGCGGCCGacGCCGCgGcGCg- -3'
miRNA:   3'- -GGGUU---CGCCGGCacCGGCGgCaCGac -5'
23797 5' -62.8 NC_005261.1 + 21771 0.67 0.495631
Target:  5'- gCCGGGCGaGCCGccgcggcgcgGGCCGCCGcaGCc- -3'
miRNA:   3'- gGGUUCGC-CGGCa---------CCGGCGGCa-CGac -5'
23797 5' -62.8 NC_005261.1 + 64690 0.67 0.504891
Target:  5'- aCCGGGCGcgucCCGgGGCCGCCGccGCg- -3'
miRNA:   3'- gGGUUCGCc---GGCaCCGGCGGCa-CGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.