miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 75515 0.73 0.235641
Target:  5'- --gAGGCGcacGCCGUGGUCGCCGcGCUGc -3'
miRNA:   3'- gggUUCGC---CGGCACCGGCGGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 51249 0.73 0.235641
Target:  5'- cUCCAGGCGGCCGU-GCUGCU--GCUGu -3'
miRNA:   3'- -GGGUUCGCCGGCAcCGGCGGcaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 23769 0.73 0.241181
Target:  5'- cCCCGGGCgGGCCGgcuagggugGGCuCGCCGgggcaggccgGCUGg -3'
miRNA:   3'- -GGGUUCG-CCGGCa--------CCG-GCGGCa---------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 23826 0.73 0.241181
Target:  5'- cCCCGGGCgGGCCGgcuagggugGGCuCGCCGgggcaggccgGCUGg -3'
miRNA:   3'- -GGGUUCG-CCGGCa--------CCG-GCGGCa---------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 30189 0.73 0.241181
Target:  5'- gCCgAGGCGGCCGccgcgcuggaGGCgGCCGcGCUGg -3'
miRNA:   3'- -GGgUUCGCCGGCa---------CCGgCGGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 105119 0.73 0.24683
Target:  5'- gCCCGcGCGGgCGcgGGCCGCCG-GCg- -3'
miRNA:   3'- -GGGUuCGCCgGCa-CCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 63746 0.73 0.252588
Target:  5'- gCCGcGGCGG-CGUaGGCCGCCGUGUa- -3'
miRNA:   3'- gGGU-UCGCCgGCA-CCGGCGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 34336 0.73 0.252588
Target:  5'- cCCCAAGgGGCCGgGGCgGCCGacgggGCc- -3'
miRNA:   3'- -GGGUUCgCCGGCaCCGgCGGCa----CGac -5'
23797 5' -62.8 NC_005261.1 + 116006 0.72 0.258456
Target:  5'- gCCCgAGGCGGCC-UGaGCCGCCGacgGCg- -3'
miRNA:   3'- -GGG-UUCGCCGGcAC-CGGCGGCa--CGac -5'
23797 5' -62.8 NC_005261.1 + 35954 0.72 0.269911
Target:  5'- gCCCGAGCccggccaGGCCGcucGGCCGCUGUaGCg- -3'
miRNA:   3'- -GGGUUCG-------CCGGCa--CCGGCGGCA-CGac -5'
23797 5' -62.8 NC_005261.1 + 38932 0.72 0.270525
Target:  5'- gCCAagccGGCGGCCGggcgGGCCGCgGcgcgcggGCUGc -3'
miRNA:   3'- gGGU----UCGCCGGCa---CCGGCGgCa------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 2607 0.72 0.270525
Target:  5'- gCCGucGGCGGCgG-GGCCGCCGgGCg- -3'
miRNA:   3'- gGGU--UCGCCGgCaCCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 131860 0.72 0.276728
Target:  5'- gUCCAAGCGGCUGcuugagcuggcGGCCGCCGccGCa- -3'
miRNA:   3'- -GGGUUCGCCGGCa----------CCGGCGGCa-CGac -5'
23797 5' -62.8 NC_005261.1 + 87067 0.72 0.276728
Target:  5'- gCCAccGCGGCCG-GGCCcagcacguaGCCGUGCa- -3'
miRNA:   3'- gGGUu-CGCCGGCaCCGG---------CGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 55447 0.72 0.283044
Target:  5'- cUCCGAGCGGCgCGgugGGCCaGUCGUcGCUu -3'
miRNA:   3'- -GGGUUCGCCG-GCa--CCGG-CGGCA-CGAc -5'
23797 5' -62.8 NC_005261.1 + 12710 0.72 0.289473
Target:  5'- gCCCGAGCGGCuCGggcgcgcgGGcCCGCCG-GCc- -3'
miRNA:   3'- -GGGUUCGCCG-GCa-------CC-GGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 53566 0.71 0.296017
Target:  5'- gCCCAggcgcacuAGCGGCCGcgGGCCGgCG-GCg- -3'
miRNA:   3'- -GGGU--------UCGCCGGCa-CCGGCgGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 99850 0.71 0.296017
Target:  5'- gCCC-AGCGGCaccGGCCGCCGcGCg- -3'
miRNA:   3'- -GGGuUCGCCGgcaCCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 70861 0.71 0.302004
Target:  5'- gUCCAgGGCGGCCGccguggcgUGGCCggcggugcacaugGCCGUGCa- -3'
miRNA:   3'- -GGGU-UCGCCGGC--------ACCGG-------------CGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 31053 0.71 0.302004
Target:  5'- cCCCAGcGCGGCgG-GaGCCGCCGcugcccgcccgcgUGCUGg -3'
miRNA:   3'- -GGGUU-CGCCGgCaC-CGGCGGC-------------ACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.