miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 135308 0.71 0.302675
Target:  5'- aCC-GGCGuGUCGcccugGGCgGCCGUGCUGg -3'
miRNA:   3'- gGGuUCGC-CGGCa----CCGgCGGCACGAC- -5'
23797 5' -62.8 NC_005261.1 + 118388 0.71 0.308765
Target:  5'- gCCCGaggcgcuGGCGGCCGcgGGCgccgcaGCCGcGCUGg -3'
miRNA:   3'- -GGGU-------UCGCCGGCa-CCGg-----CGGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 89427 0.71 0.309448
Target:  5'- ----cGCGGCCGccgGGCuccccgcgccCGCCGUGCUGg -3'
miRNA:   3'- ggguuCGCCGGCa--CCG----------GCGGCACGAC- -5'
23797 5' -62.8 NC_005261.1 + 51746 0.71 0.309448
Target:  5'- cCCCGGGCuGCCGcUGGCCGUgaaGCUGg -3'
miRNA:   3'- -GGGUUCGcCGGC-ACCGGCGgcaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 32211 0.71 0.315641
Target:  5'- gCCCGAcgagcugccggccGCGGCgGUGGCCuucugcgcgGCCGcgcUGCUGg -3'
miRNA:   3'- -GGGUU-------------CGCCGgCACCGG---------CGGC---ACGAC- -5'
23797 5' -62.8 NC_005261.1 + 65529 0.71 0.316335
Target:  5'- aCCCAGcGCGGCCGcgcgGGCagcaGCgCGUGCc- -3'
miRNA:   3'- -GGGUU-CGCCGGCa---CCGg---CG-GCACGac -5'
23797 5' -62.8 NC_005261.1 + 24920 0.71 0.330455
Target:  5'- gCCCucGGCGGCUGcaGCCGCCGaggggcagGCUGg -3'
miRNA:   3'- -GGGu-UCGCCGGCacCGGCGGCa-------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 2234 0.7 0.345034
Target:  5'- gCCCGccgcgcaccGGCGGCCacucaGGCCGCCG-GCg- -3'
miRNA:   3'- -GGGU---------UCGCCGGca---CCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 60408 0.7 0.345034
Target:  5'- gCCGGGcCGGcCCGggcccggGGCCGCCGcGCUc -3'
miRNA:   3'- gGGUUC-GCC-GGCa------CCGGCGGCaCGAc -5'
23797 5' -62.8 NC_005261.1 + 118052 0.7 0.350245
Target:  5'- gCCCGcgcuGGCGGCCGcGGCagcgGCCGcagccgcgcucgucUGCUGg -3'
miRNA:   3'- -GGGU----UCGCCGGCaCCGg---CGGC--------------ACGAC- -5'
23797 5' -62.8 NC_005261.1 + 6421 0.7 0.351744
Target:  5'- gCCCGgccugcucgcgagGGCGGuCCGggGGCCGgCCGgGCUGc -3'
miRNA:   3'- -GGGU-------------UCGCC-GGCa-CCGGC-GGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 1750 0.7 0.352495
Target:  5'- gCCCAGGCG--CGUGGCCaCCGUGUa- -3'
miRNA:   3'- -GGGUUCGCcgGCACCGGcGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 107820 0.7 0.352495
Target:  5'- gCCCuAGCGGCCGccGCCGCCucUGCc- -3'
miRNA:   3'- -GGGuUCGCCGGCacCGGCGGc-ACGac -5'
23797 5' -62.8 NC_005261.1 + 138035 0.7 0.360069
Target:  5'- gCCC-GGCGGCgGUGGCgGCgGUgGCg- -3'
miRNA:   3'- -GGGuUCGCCGgCACCGgCGgCA-CGac -5'
23797 5' -62.8 NC_005261.1 + 364 0.7 0.360069
Target:  5'- gCCC-GGCGGCgGUGGCgGCgGUgGCg- -3'
miRNA:   3'- -GGGuUCGCCGgCACCGgCGgCA-CGac -5'
23797 5' -62.8 NC_005261.1 + 53654 0.7 0.375556
Target:  5'- uCgCAGGCGGCC-UGGCCGCgGgucGCg- -3'
miRNA:   3'- -GgGUUCGCCGGcACCGGCGgCa--CGac -5'
23797 5' -62.8 NC_005261.1 + 102220 0.7 0.383466
Target:  5'- aCgCAAGCacGGCCucgaUGGCCGCCGUcgcccGCUGc -3'
miRNA:   3'- -GgGUUCG--CCGGc---ACCGGCGGCA-----CGAC- -5'
23797 5' -62.8 NC_005261.1 + 91130 0.7 0.383466
Target:  5'- gCC--GCGGCCGaGGCCucaGCCGUGCc- -3'
miRNA:   3'- gGGuuCGCCGGCaCCGG---CGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 8790 0.7 0.383466
Target:  5'- cCCCucGGCGGCUGcaGCCGCCGaggGCUu -3'
miRNA:   3'- -GGGu-UCGCCGGCacCGGCGGCa--CGAc -5'
23797 5' -62.8 NC_005261.1 + 133838 0.7 0.383466
Target:  5'- gCCGcguGCGcGCCGUGGCCGgCGcGCg- -3'
miRNA:   3'- gGGUu--CGC-CGGCACCGGCgGCaCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.