miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 98778 0.69 0.391486
Target:  5'- gCCGc-CGGCCGccGGCCGCgCGUGCg- -3'
miRNA:   3'- gGGUucGCCGGCa-CCGGCG-GCACGac -5'
23797 5' -62.8 NC_005261.1 + 106564 0.69 0.391486
Target:  5'- gCCGGcGCGcGCCGgccccggGGCCGCCGcGCg- -3'
miRNA:   3'- gGGUU-CGC-CGGCa------CCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 106231 0.69 0.39635
Target:  5'- gCCUGGcGCGGCCGccgcgcccuaccgGGCCGCCGccgccGCUGc -3'
miRNA:   3'- -GGGUU-CGCCGGCa------------CCGGCGGCa----CGAC- -5'
23797 5' -62.8 NC_005261.1 + 5564 0.69 0.399614
Target:  5'- gCCCGAGCGGCgGagauggGGgCGCCGaggGCg- -3'
miRNA:   3'- -GGGUUCGCCGgCa-----CCgGCGGCa--CGac -5'
23797 5' -62.8 NC_005261.1 + 29414 0.69 0.399614
Target:  5'- gCUAcgcGGCGGCCGcggGGCCcgcgGCCGUGUUc -3'
miRNA:   3'- gGGU---UCGCCGGCa--CCGG----CGGCACGAc -5'
23797 5' -62.8 NC_005261.1 + 104702 0.69 0.399614
Target:  5'- cCCCGaagAGCGGCUGgacggccgagGGCgCGUCGUGCc- -3'
miRNA:   3'- -GGGU---UCGCCGGCa---------CCG-GCGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 38356 0.69 0.424636
Target:  5'- gCCCAgcgggccuuuggGGCGGCCGggaagcGGCaCcUCGUGCUGa -3'
miRNA:   3'- -GGGU------------UCGCCGGCa-----CCG-GcGGCACGAC- -5'
23797 5' -62.8 NC_005261.1 + 107301 0.69 0.424636
Target:  5'- cUCCGccGCGGCCacGGCCGCCGcgUGCa- -3'
miRNA:   3'- -GGGUu-CGCCGGcaCCGGCGGC--ACGac -5'
23797 5' -62.8 NC_005261.1 + 5510 0.69 0.424636
Target:  5'- gCCGcggcAGCGGCgGcgaGGCCGCCG-GCUu -3'
miRNA:   3'- gGGU----UCGCCGgCa--CCGGCGGCaCGAc -5'
23797 5' -62.8 NC_005261.1 + 33162 0.69 0.433182
Target:  5'- aCCGcgcGGCGGCCGa-GCCGCCGUccGCc- -3'
miRNA:   3'- gGGU---UCGCCGGCacCGGCGGCA--CGac -5'
23797 5' -62.8 NC_005261.1 + 1176 0.69 0.433182
Target:  5'- gCCCGcgccGCGGCCGgGGCCgggGCCGgGCg- -3'
miRNA:   3'- -GGGUu---CGCCGGCaCCGG---CGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 43413 0.69 0.433182
Target:  5'- gCCGggGGCGGCCuccGCCGCCGgcggggaGCUGg -3'
miRNA:   3'- gGGU--UCGCCGGcacCGGCGGCa------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 39791 0.68 0.441827
Target:  5'- gCCGGGgGGCgGcgcGGCCGCCG-GCg- -3'
miRNA:   3'- gGGUUCgCCGgCa--CCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 96137 0.68 0.441827
Target:  5'- aCCUGcggcGGCGGCaCGagaaGGCCGUCGUGCc- -3'
miRNA:   3'- -GGGU----UCGCCG-GCa---CCGGCGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 44007 0.68 0.441827
Target:  5'- uCCCAGcccggcuucggcGCGGCgGgcGGCCGCCGcGCg- -3'
miRNA:   3'- -GGGUU------------CGCCGgCa-CCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 30894 0.68 0.450569
Target:  5'- gCCCGAGCucgGGCUGgGGCCGcCCG-GCc- -3'
miRNA:   3'- -GGGUUCG---CCGGCaCCGGC-GGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 10473 0.68 0.454092
Target:  5'- gCCCGAGCaGGCCGgcccgcugcaccggcUuuugcgcgcGGCCGCCGcUGCg- -3'
miRNA:   3'- -GGGUUCG-CCGGC---------------A---------CCGGCGGC-ACGac -5'
23797 5' -62.8 NC_005261.1 + 39866 0.68 0.459405
Target:  5'- gCCCAGGCacacGGCCagcaGGCCGCgCGcgcgGCUGu -3'
miRNA:   3'- -GGGUUCG----CCGGca--CCGGCG-GCa---CGAC- -5'
23797 5' -62.8 NC_005261.1 + 90767 0.68 0.459405
Target:  5'- cCCCgAGGCcGCCGaGGCCGCUGcgGCg- -3'
miRNA:   3'- -GGG-UUCGcCGGCaCCGGCGGCa-CGac -5'
23797 5' -62.8 NC_005261.1 + 98139 0.68 0.459405
Target:  5'- aCC-GGCGGCCGUcggcggcaaGGCCGCgGgcgGCg- -3'
miRNA:   3'- gGGuUCGCCGGCA---------CCGGCGgCa--CGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.