miRNA display CGI


Results 81 - 100 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 130467 0.68 0.468333
Target:  5'- gCCCGAGCGGCuCGcGGCgUGCCucgGCg- -3'
miRNA:   3'- -GGGUUCGCCG-GCaCCG-GCGGca-CGac -5'
23797 5' -62.8 NC_005261.1 + 103369 0.68 0.468333
Target:  5'- cCCCAGcuCGGCCGcGcGCCGCCGcGCc- -3'
miRNA:   3'- -GGGUUc-GCCGGCaC-CGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 88777 0.68 0.468333
Target:  5'- cUCCu--CGGCCcUGGCCGCCG-GCg- -3'
miRNA:   3'- -GGGuucGCCGGcACCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 99467 0.68 0.468333
Target:  5'- aCCCGcGGCGGCgcUGGCCGCUGcgGCc- -3'
miRNA:   3'- -GGGU-UCGCCGgcACCGGCGGCa-CGac -5'
23797 5' -62.8 NC_005261.1 + 66924 0.68 0.471029
Target:  5'- gCCCAggagggcgucgaaGGCGGCCGcguacaGGCCGuuGUcguccgaccgcaccuGCUGg -3'
miRNA:   3'- -GGGU-------------UCGCCGGCa-----CCGGCggCA---------------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 81011 0.68 0.471929
Target:  5'- gCCCAGgcccacgggcacGCGGuCCGUguacugguucgugauGGCCGCguaCGUGCUGc -3'
miRNA:   3'- -GGGUU------------CGCC-GGCA---------------CCGGCG---GCACGAC- -5'
23797 5' -62.8 NC_005261.1 + 30757 0.68 0.477349
Target:  5'- gCCCGGGCccuaguccgGGCCGgagcccGGCCGCggcgguggagGUGCUGg -3'
miRNA:   3'- -GGGUUCG---------CCGGCa-----CCGGCGg---------CACGAC- -5'
23797 5' -62.8 NC_005261.1 + 101576 0.68 0.477349
Target:  5'- gCUCGGcGCGcGCCGUGGCCuCCGcGCg- -3'
miRNA:   3'- -GGGUU-CGC-CGGCACCGGcGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 125696 0.68 0.477349
Target:  5'- gCCGGGCuuGGcCCGgcgacGGCCGCCGcgggcucgGCUGg -3'
miRNA:   3'- gGGUUCG--CC-GGCa----CCGGCGGCa-------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 102677 0.68 0.485535
Target:  5'- gCCCAGcgccgcguccgccGCGGCCGUcgcuGCCGCCGU-CUc -3'
miRNA:   3'- -GGGUU-------------CGCCGGCAc---CGGCGGCAcGAc -5'
23797 5' -62.8 NC_005261.1 + 93225 0.68 0.486449
Target:  5'- gCCAGcGCGGCaaaaaaGcGGCCGCCGUcGCc- -3'
miRNA:   3'- gGGUU-CGCCGg-----CaCCGGCGGCA-CGac -5'
23797 5' -62.8 NC_005261.1 + 74120 0.68 0.486449
Target:  5'- aCCC-GGUGGUCcUGG-CGCCgGUGCUGg -3'
miRNA:   3'- -GGGuUCGCCGGcACCgGCGG-CACGAC- -5'
23797 5' -62.8 NC_005261.1 + 102947 0.67 0.49471
Target:  5'- gCCGcugcggcGGCGGCCGcGGgCGCCGcggGCUc -3'
miRNA:   3'- gGGU-------UCGCCGGCaCCgGCGGCa--CGAc -5'
23797 5' -62.8 NC_005261.1 + 132948 0.67 0.495631
Target:  5'- cCCCGAGCGcugcGCCGacgUGGCCGCCuucGUcGCc- -3'
miRNA:   3'- -GGGUUCGC----CGGC---ACCGGCGG---CA-CGac -5'
23797 5' -62.8 NC_005261.1 + 98665 0.67 0.495631
Target:  5'- cCCCAGGCGagggcgggcuccGCCGgGGCCggaggcgcgGCCGgaGCUGg -3'
miRNA:   3'- -GGGUUCGC------------CGGCaCCGG---------CGGCa-CGAC- -5'
23797 5' -62.8 NC_005261.1 + 81418 0.67 0.495631
Target:  5'- cCCCAggcacaGGCGGCguCGUcGGCCGCCccGCg- -3'
miRNA:   3'- -GGGU------UCGCCG--GCA-CCGGCGGcaCGac -5'
23797 5' -62.8 NC_005261.1 + 44244 0.67 0.495631
Target:  5'- gCCCAGcgcGCGGCCGacGCCGCgGcGCg- -3'
miRNA:   3'- -GGGUU---CGCCGGCacCGGCGgCaCGac -5'
23797 5' -62.8 NC_005261.1 + 21771 0.67 0.495631
Target:  5'- gCCGGGCGaGCCGccgcggcgcgGGCCGCCGcaGCc- -3'
miRNA:   3'- gGGUUCGC-CGGCa---------CCGGCGGCa-CGac -5'
23797 5' -62.8 NC_005261.1 + 50949 0.67 0.504891
Target:  5'- uUCUAcGCGGCCGUGGUCGacuaCG-GCg- -3'
miRNA:   3'- -GGGUuCGCCGGCACCGGCg---GCaCGac -5'
23797 5' -62.8 NC_005261.1 + 64690 0.67 0.504891
Target:  5'- aCCGGGCGcgucCCGgGGCCGCCGccGCg- -3'
miRNA:   3'- gGGUUCGCc---GGCaCCGGCGGCa-CGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.