miRNA display CGI


Results 121 - 140 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 3672 0.67 0.542625
Target:  5'- gCC--GCGGCCGgcaGGCCGCgGcccGCUGc -3'
miRNA:   3'- gGGuuCGCCGGCa--CCGGCGgCa--CGAC- -5'
23797 5' -62.8 NC_005261.1 + 70811 0.67 0.542625
Target:  5'- gUCCGcgccGGCGGCCccgGGCgCGCCG-GCg- -3'
miRNA:   3'- -GGGU----UCGCCGGca-CCG-GCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 84578 0.67 0.542625
Target:  5'- cCCCGuAGaCGGCCGUcugcgccaGCgCGCCGuUGCUGc -3'
miRNA:   3'- -GGGU-UC-GCCGGCAc-------CG-GCGGC-ACGAC- -5'
23797 5' -62.8 NC_005261.1 + 51911 0.67 0.54837
Target:  5'- gCCCGggcgcgcAGCGGCCGcGGCCuggucccgcucgucGCCG-GCg- -3'
miRNA:   3'- -GGGU-------UCGCCGGCaCCGG--------------CGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 23587 0.67 0.55221
Target:  5'- gCUCAuGGCGGCgGUGGUgguggcuguCGCCGccGCUGc -3'
miRNA:   3'- -GGGU-UCGCCGgCACCG---------GCGGCa-CGAC- -5'
23797 5' -62.8 NC_005261.1 + 34272 0.67 0.55221
Target:  5'- gCCCGuagaccucacGGCGGCCGgcggGGaCGCCGggaGCg- -3'
miRNA:   3'- -GGGU----------UCGCCGGCa---CCgGCGGCa--CGac -5'
23797 5' -62.8 NC_005261.1 + 104337 0.67 0.55221
Target:  5'- gUCC-AGCGGCC--GGCCGUCGcGCa- -3'
miRNA:   3'- -GGGuUCGCCGGcaCCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 100072 0.67 0.55221
Target:  5'- gCCCGggGGCGcGCCGcgccccucGCCGCCGccGCUGc -3'
miRNA:   3'- -GGGU--UCGC-CGGCac------CGGCGGCa-CGAC- -5'
23797 5' -62.8 NC_005261.1 + 125801 0.67 0.55221
Target:  5'- aCgGGGCuugGGCCGgGGCCGCCGcgaGCg- -3'
miRNA:   3'- gGgUUCG---CCGGCaCCGGCGGCa--CGac -5'
23797 5' -62.8 NC_005261.1 + 97892 0.66 0.561845
Target:  5'- cCCCGggccGGCGGaCCGUcuGGgCGCCGgGCg- -3'
miRNA:   3'- -GGGU----UCGCC-GGCA--CCgGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 48767 0.66 0.561845
Target:  5'- cCCCGGGCGGCCcgacgagcucGGCgauCGCCG-GCUc -3'
miRNA:   3'- -GGGUUCGCCGGca--------CCG---GCGGCaCGAc -5'
23797 5' -62.8 NC_005261.1 + 117726 0.66 0.561845
Target:  5'- cCCgCAAGCGGCCGcgcgcugGcGCCGCCGc---- -3'
miRNA:   3'- -GG-GUUCGCCGGCa------C-CGGCGGCacgac -5'
23797 5' -62.8 NC_005261.1 + 79713 0.66 0.561845
Target:  5'- -gCGGGCGGCUGUagcagacGCCGCCGgGCg- -3'
miRNA:   3'- ggGUUCGCCGGCAc------CGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 40242 0.66 0.561845
Target:  5'- gCCCGGG-GGCCGUgagcgccauggcGGCgGCCGcgGCg- -3'
miRNA:   3'- -GGGUUCgCCGGCA------------CCGgCGGCa-CGac -5'
23797 5' -62.8 NC_005261.1 + 9102 0.66 0.561845
Target:  5'- cCUCAcguGGUGuGCCGagagGGCCGCCGgGaCUGg -3'
miRNA:   3'- -GGGU---UCGC-CGGCa---CCGGCGGCaC-GAC- -5'
23797 5' -62.8 NC_005261.1 + 79813 0.66 0.568616
Target:  5'- cCCCAacaugcgcgcGGCGGCgCGgcgGccagcgcagcgcuaGCCGCCGcGCUGg -3'
miRNA:   3'- -GGGU----------UCGCCG-GCa--C--------------CGGCGGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 39370 0.66 0.571525
Target:  5'- cCUCAucGGCGGCCGgggagGGCgGCCcugGCg- -3'
miRNA:   3'- -GGGU--UCGCCGGCa----CCGgCGGca-CGac -5'
23797 5' -62.8 NC_005261.1 + 38191 0.66 0.571525
Target:  5'- gCCUggGCGcGCCGcGGCgUGCUGcUGCUc -3'
miRNA:   3'- -GGGuuCGC-CGGCaCCG-GCGGC-ACGAc -5'
23797 5' -62.8 NC_005261.1 + 98743 0.66 0.571525
Target:  5'- gCCGcGCGGgCGuUGGCCGCgCGguugccGCUGc -3'
miRNA:   3'- gGGUuCGCCgGC-ACCGGCG-GCa-----CGAC- -5'
23797 5' -62.8 NC_005261.1 + 121046 0.66 0.571525
Target:  5'- gCCAcacgucGCGGuuGUGGCgCGCgGUGUg- -3'
miRNA:   3'- gGGUu-----CGCCggCACCG-GCGgCACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.