miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 23587 0.67 0.55221
Target:  5'- gCUCAuGGCGGCgGUGGUgguggcuguCGCCGccGCUGc -3'
miRNA:   3'- -GGGU-UCGCCGgCACCG---------GCGGCa-CGAC- -5'
23797 5' -62.8 NC_005261.1 + 51911 0.67 0.54837
Target:  5'- gCCCGggcgcgcAGCGGCCGcGGCCuggucccgcucgucGCCG-GCg- -3'
miRNA:   3'- -GGGU-------UCGCCGGCaCCGG--------------CGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 3672 0.67 0.542625
Target:  5'- gCC--GCGGCCGgcaGGCCGCgGcccGCUGc -3'
miRNA:   3'- gGGuuCGCCGGCa--CCGGCGgCa--CGAC- -5'
23797 5' -62.8 NC_005261.1 + 84578 0.67 0.542625
Target:  5'- cCCCGuAGaCGGCCGUcugcgccaGCgCGCCGuUGCUGc -3'
miRNA:   3'- -GGGU-UC-GCCGGCAc-------CG-GCGGC-ACGAC- -5'
23797 5' -62.8 NC_005261.1 + 70811 0.67 0.542625
Target:  5'- gUCCGcgccGGCGGCCccgGGCgCGCCG-GCg- -3'
miRNA:   3'- -GGGU----UCGCCGGca-CCG-GCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 116713 0.67 0.533097
Target:  5'- gCCGccAGCuGGCCGacgucGCCGCCcUGCUGa -3'
miRNA:   3'- gGGU--UCG-CCGGCac---CGGCGGcACGAC- -5'
23797 5' -62.8 NC_005261.1 + 74688 0.67 0.533097
Target:  5'- aCCGcGCGGgaGcUGGCCGCCGcGCg- -3'
miRNA:   3'- gGGUuCGCCggC-ACCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 129698 0.67 0.533097
Target:  5'- gCCgGGGCcggGGCCGgaggcaGGcCCGCCG-GCUGc -3'
miRNA:   3'- -GGgUUCG---CCGGCa-----CC-GGCGGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 69509 0.67 0.523628
Target:  5'- gCC-GGCGGCg--GGCUGCCGgaGCUGg -3'
miRNA:   3'- gGGuUCGCCGgcaCCGGCGGCa-CGAC- -5'
23797 5' -62.8 NC_005261.1 + 28749 0.67 0.523628
Target:  5'- cCCCAGaggacgccGCGGCCGggggcgccugGGCCGCgGcGCg- -3'
miRNA:   3'- -GGGUU--------CGCCGGCa---------CCGGCGgCaCGac -5'
23797 5' -62.8 NC_005261.1 + 2784 0.67 0.523628
Target:  5'- cCCCGAGgGGCU---GCCGCCG-GCg- -3'
miRNA:   3'- -GGGUUCgCCGGcacCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 83837 0.67 0.523628
Target:  5'- aUCCGcuGGCgGGCCGcGGCCccGCUGgGCUGg -3'
miRNA:   3'- -GGGU--UCG-CCGGCaCCGG--CGGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 42909 0.67 0.523628
Target:  5'- aCCC-GGCGcuCCGgGGCCGCCGgGCg- -3'
miRNA:   3'- -GGGuUCGCc-GGCaCCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 17544 0.67 0.523628
Target:  5'- aCUggGCGGCgCG-GGcCCGCCGUucgGCg- -3'
miRNA:   3'- gGGuuCGCCG-GCaCC-GGCGGCA---CGac -5'
23797 5' -62.8 NC_005261.1 + 13193 0.67 0.523628
Target:  5'- uCCCAGGCcuccaCGUGGCCGuuGUaCUGc -3'
miRNA:   3'- -GGGUUCGccg--GCACCGGCggCAcGAC- -5'
23797 5' -62.8 NC_005261.1 + 16233 0.67 0.519859
Target:  5'- gCCCucggGGCGGUCGacguccgcgccggGGCCGCCGgggccggGCUu -3'
miRNA:   3'- -GGGu---UCGCCGGCa------------CCGGCGGCa------CGAc -5'
23797 5' -62.8 NC_005261.1 + 16307 0.67 0.514225
Target:  5'- gCCCAgcGGCGGCCG-GGCCcucccccucgccGCCGgucucCUGc -3'
miRNA:   3'- -GGGU--UCGCCGGCaCCGG------------CGGCac---GAC- -5'
23797 5' -62.8 NC_005261.1 + 68755 0.67 0.514225
Target:  5'- gCCCGccGGgGcGCCGcgGaGCCGCCGUGUc- -3'
miRNA:   3'- -GGGU--UCgC-CGGCa-C-CGGCGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 38263 0.67 0.514225
Target:  5'- gCCAgccugggcugggGGCGGCUG-GuGCaCGCgGUGCUGg -3'
miRNA:   3'- gGGU------------UCGCCGGCaC-CG-GCGgCACGAC- -5'
23797 5' -62.8 NC_005261.1 + 31105 0.67 0.514225
Target:  5'- gCCC-GGCGGCCcc-GCCGCCGacgGCg- -3'
miRNA:   3'- -GGGuUCGCCGGcacCGGCGGCa--CGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.