Results 61 - 80 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 120010 | 0.67 | 0.514225 |
Target: 5'- gCUAcGCGGCCGUGugccgcGCCGCCGaGUa- -3' miRNA: 3'- gGGUuCGCCGGCAC------CGGCGGCaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 38263 | 0.67 | 0.514225 |
Target: 5'- gCCAgccugggcugggGGCGGCUG-GuGCaCGCgGUGCUGg -3' miRNA: 3'- gGGU------------UCGCCGGCaC-CG-GCGgCACGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 103781 | 0.67 | 0.504891 |
Target: 5'- aCCCAGGCcgcgGGCCGUcuucGGUgugCGCCGuUGCg- -3' miRNA: 3'- -GGGUUCG----CCGGCA----CCG---GCGGC-ACGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 75200 | 0.67 | 0.504891 |
Target: 5'- aCCUucauGGCGGCCGcGGUgGCgGcGCUGc -3' miRNA: 3'- -GGGu---UCGCCGGCaCCGgCGgCaCGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 50949 | 0.67 | 0.504891 |
Target: 5'- uUCUAcGCGGCCGUGGUCGacuaCG-GCg- -3' miRNA: 3'- -GGGUuCGCCGGCACCGGCg---GCaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 64690 | 0.67 | 0.504891 |
Target: 5'- aCCGGGCGcgucCCGgGGCCGCCGccGCg- -3' miRNA: 3'- gGGUUCGCc---GGCaCCGGCGGCa-CGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 104515 | 0.67 | 0.504891 |
Target: 5'- uCCguGGCGGCCGcgacggcGGCCGCCaccagGCg- -3' miRNA: 3'- -GGguUCGCCGGCa------CCGGCGGca---CGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 132948 | 0.67 | 0.495631 |
Target: 5'- cCCCGAGCGcugcGCCGacgUGGCCGCCuucGUcGCc- -3' miRNA: 3'- -GGGUUCGC----CGGC---ACCGGCGG---CA-CGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 98665 | 0.67 | 0.495631 |
Target: 5'- cCCCAGGCGagggcgggcuccGCCGgGGCCggaggcgcgGCCGgaGCUGg -3' miRNA: 3'- -GGGUUCGC------------CGGCaCCGG---------CGGCa-CGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 81418 | 0.67 | 0.495631 |
Target: 5'- cCCCAggcacaGGCGGCguCGUcGGCCGCCccGCg- -3' miRNA: 3'- -GGGU------UCGCCG--GCA-CCGGCGGcaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 44244 | 0.67 | 0.495631 |
Target: 5'- gCCCAGcgcGCGGCCGacGCCGCgGcGCg- -3' miRNA: 3'- -GGGUU---CGCCGGCacCGGCGgCaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 21771 | 0.67 | 0.495631 |
Target: 5'- gCCGGGCGaGCCGccgcggcgcgGGCCGCCGcaGCc- -3' miRNA: 3'- gGGUUCGC-CGGCa---------CCGGCGGCa-CGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 102947 | 0.67 | 0.49471 |
Target: 5'- gCCGcugcggcGGCGGCCGcGGgCGCCGcggGCUc -3' miRNA: 3'- gGGU-------UCGCCGGCaCCgGCGGCa--CGAc -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 74120 | 0.68 | 0.486449 |
Target: 5'- aCCC-GGUGGUCcUGG-CGCCgGUGCUGg -3' miRNA: 3'- -GGGuUCGCCGGcACCgGCGG-CACGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 93225 | 0.68 | 0.486449 |
Target: 5'- gCCAGcGCGGCaaaaaaGcGGCCGCCGUcGCc- -3' miRNA: 3'- gGGUU-CGCCGg-----CaCCGGCGGCA-CGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 102677 | 0.68 | 0.485535 |
Target: 5'- gCCCAGcgccgcguccgccGCGGCCGUcgcuGCCGCCGU-CUc -3' miRNA: 3'- -GGGUU-------------CGCCGGCAc---CGGCGGCAcGAc -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 101576 | 0.68 | 0.477349 |
Target: 5'- gCUCGGcGCGcGCCGUGGCCuCCGcGCg- -3' miRNA: 3'- -GGGUU-CGC-CGGCACCGGcGGCaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 125696 | 0.68 | 0.477349 |
Target: 5'- gCCGGGCuuGGcCCGgcgacGGCCGCCGcgggcucgGCUGg -3' miRNA: 3'- gGGUUCG--CC-GGCa----CCGGCGGCa-------CGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 30757 | 0.68 | 0.477349 |
Target: 5'- gCCCGGGCccuaguccgGGCCGgagcccGGCCGCggcgguggagGUGCUGg -3' miRNA: 3'- -GGGUUCG---------CCGGCa-----CCGGCGg---------CACGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 81011 | 0.68 | 0.471929 |
Target: 5'- gCCCAGgcccacgggcacGCGGuCCGUguacugguucgugauGGCCGCguaCGUGCUGc -3' miRNA: 3'- -GGGUU------------CGCC-GGCA---------------CCGGCG---GCACGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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