miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 364 0.7 0.360069
Target:  5'- gCCC-GGCGGCgGUGGCgGCgGUgGCg- -3'
miRNA:   3'- -GGGuUCGCCGgCACCGgCGgCA-CGac -5'
23797 5' -62.8 NC_005261.1 + 1176 0.69 0.433182
Target:  5'- gCCCGcgccGCGGCCGgGGCCgggGCCGgGCg- -3'
miRNA:   3'- -GGGUu---CGCCGGCaCCGG---CGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 1396 0.66 0.590997
Target:  5'- gCCGGGC-GCCGcGGCCGCgGcgGCg- -3'
miRNA:   3'- gGGUUCGcCGGCaCCGGCGgCa-CGac -5'
23797 5' -62.8 NC_005261.1 + 1750 0.7 0.352495
Target:  5'- gCCCAGGCG--CGUGGCCaCCGUGUa- -3'
miRNA:   3'- -GGGUUCGCcgGCACCGGcGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 2234 0.7 0.345034
Target:  5'- gCCCGccgcgcaccGGCGGCCacucaGGCCGCCG-GCg- -3'
miRNA:   3'- -GGGU---------UCGCCGGca---CCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 2607 0.72 0.270525
Target:  5'- gCCGucGGCGGCgG-GGCCGCCGgGCg- -3'
miRNA:   3'- gGGU--UCGCCGgCaCCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 2784 0.67 0.523628
Target:  5'- cCCCGAGgGGCU---GCCGCCG-GCg- -3'
miRNA:   3'- -GGGUUCgCCGGcacCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 3441 0.74 0.199795
Target:  5'- gUCCAGGCGGgCGcgcgGGCCGCCGcGCc- -3'
miRNA:   3'- -GGGUUCGCCgGCa---CCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 3510 0.66 0.606657
Target:  5'- gCCAGcGCGGCCGccuccagcgcggcGGCCGCCucgGCg- -3'
miRNA:   3'- gGGUU-CGCCGGCa------------CCGGCGGca-CGac -5'
23797 5' -62.8 NC_005261.1 + 3672 0.67 0.542625
Target:  5'- gCC--GCGGCCGgcaGGCCGCgGcccGCUGc -3'
miRNA:   3'- gGGuuCGCCGGCa--CCGGCGgCa--CGAC- -5'
23797 5' -62.8 NC_005261.1 + 5510 0.69 0.424636
Target:  5'- gCCGcggcAGCGGCgGcgaGGCCGCCG-GCUu -3'
miRNA:   3'- gGGU----UCGCCGgCa--CCGGCGGCaCGAc -5'
23797 5' -62.8 NC_005261.1 + 5564 0.69 0.399614
Target:  5'- gCCCGAGCGGCgGagauggGGgCGCCGaggGCg- -3'
miRNA:   3'- -GGGUUCGCCGgCa-----CCgGCGGCa--CGac -5'
23797 5' -62.8 NC_005261.1 + 6421 0.7 0.351744
Target:  5'- gCCCGgccugcucgcgagGGCGGuCCGggGGCCGgCCGgGCUGc -3'
miRNA:   3'- -GGGU-------------UCGCC-GGCa-CCGGC-GGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 7663 0.79 0.100125
Target:  5'- uUCAAGCGGCCGcGGCCGCCGccUGUg- -3'
miRNA:   3'- gGGUUCGCCGGCaCCGGCGGC--ACGac -5'
23797 5' -62.8 NC_005261.1 + 8790 0.7 0.383466
Target:  5'- cCCCucGGCGGCUGcaGCCGCCGaggGCUu -3'
miRNA:   3'- -GGGu-UCGCCGGCacCGGCGGCa--CGAc -5'
23797 5' -62.8 NC_005261.1 + 9102 0.66 0.561845
Target:  5'- cCUCAcguGGUGuGCCGagagGGCCGCCGgGaCUGg -3'
miRNA:   3'- -GGGU---UCGC-CGGCa---CCGGCGGCaC-GAC- -5'
23797 5' -62.8 NC_005261.1 + 10231 0.66 0.581244
Target:  5'- gCCCAGGCGGgcCCGcgcacucGCCGCCGcggGcCUGg -3'
miRNA:   3'- -GGGUUCGCC--GGCac-----CGGCGGCa--C-GAC- -5'
23797 5' -62.8 NC_005261.1 + 10473 0.68 0.454092
Target:  5'- gCCCGAGCaGGCCGgcccgcugcaccggcUuuugcgcgcGGCCGCCGcUGCg- -3'
miRNA:   3'- -GGGUUCG-CCGGC---------------A---------CCGGCGGC-ACGac -5'
23797 5' -62.8 NC_005261.1 + 12194 0.66 0.590997
Target:  5'- aCCAugcAGCGccgccGCCGgugccGCCGCCGcUGCUGc -3'
miRNA:   3'- gGGU---UCGC-----CGGCac---CGGCGGC-ACGAC- -5'
23797 5' -62.8 NC_005261.1 + 12710 0.72 0.289473
Target:  5'- gCCCGAGCGGCuCGggcgcgcgGGcCCGCCG-GCc- -3'
miRNA:   3'- -GGGUUCGCCG-GCa-------CC-GGCGGCaCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.