miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 13193 0.67 0.523628
Target:  5'- uCCCAGGCcuccaCGUGGCCGuuGUaCUGc -3'
miRNA:   3'- -GGGUUCGccg--GCACCGGCggCAcGAC- -5'
23797 5' -62.8 NC_005261.1 + 15424 0.66 0.590997
Target:  5'- gCCCAgAGuCGGCCGggcgcgGGCCGgCGaUGgaGa -3'
miRNA:   3'- -GGGU-UC-GCCGGCa-----CCGGCgGC-ACgaC- -5'
23797 5' -62.8 NC_005261.1 + 16233 0.67 0.519859
Target:  5'- gCCCucggGGCGGUCGacguccgcgccggGGCCGCCGgggccggGCUu -3'
miRNA:   3'- -GGGu---UCGCCGGCa------------CCGGCGGCa------CGAc -5'
23797 5' -62.8 NC_005261.1 + 16307 0.67 0.514225
Target:  5'- gCCCAgcGGCGGCCG-GGCCcucccccucgccGCCGgucucCUGc -3'
miRNA:   3'- -GGGU--UCGCCGGCaCCGG------------CGGCac---GAC- -5'
23797 5' -62.8 NC_005261.1 + 17544 0.67 0.523628
Target:  5'- aCUggGCGGCgCG-GGcCCGCCGUucgGCg- -3'
miRNA:   3'- gGGuuCGCCG-GCaCC-GGCGGCA---CGac -5'
23797 5' -62.8 NC_005261.1 + 21771 0.67 0.495631
Target:  5'- gCCGGGCGaGCCGccgcggcgcgGGCCGCCGcaGCc- -3'
miRNA:   3'- gGGUUCGC-CGGCa---------CCGGCGGCa-CGac -5'
23797 5' -62.8 NC_005261.1 + 23209 0.66 0.581244
Target:  5'- gCCCGcagcGGCGGCCGcGcGCaaaaGCCgGUGCa- -3'
miRNA:   3'- -GGGU----UCGCCGGCaC-CGg---CGG-CACGac -5'
23797 5' -62.8 NC_005261.1 + 23587 0.67 0.55221
Target:  5'- gCUCAuGGCGGCgGUGGUgguggcuguCGCCGccGCUGc -3'
miRNA:   3'- -GGGU-UCGCCGgCACCG---------GCGGCa-CGAC- -5'
23797 5' -62.8 NC_005261.1 + 23769 0.73 0.241181
Target:  5'- cCCCGGGCgGGCCGgcuagggugGGCuCGCCGgggcaggccgGCUGg -3'
miRNA:   3'- -GGGUUCG-CCGGCa--------CCG-GCGGCa---------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 23826 0.73 0.241181
Target:  5'- cCCCGGGCgGGCCGgcuagggugGGCuCGCCGgggcaggccgGCUGg -3'
miRNA:   3'- -GGGUUCG-CCGGCa--------CCG-GCGGCa---------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 23883 0.74 0.214539
Target:  5'- cCCCGGGCgGGCCGgcuagggugGGCuCGCUGgGCUGg -3'
miRNA:   3'- -GGGUUCG-CCGGCa--------CCG-GCGGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 24920 0.71 0.330455
Target:  5'- gCCCucGGCGGCUGcaGCCGCCGaggggcagGCUGg -3'
miRNA:   3'- -GGGu-UCGCCGGCacCGGCGGCa-------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 28749 0.67 0.523628
Target:  5'- cCCCAGaggacgccGCGGCCGggggcgccugGGCCGCgGcGCg- -3'
miRNA:   3'- -GGGUU--------CGCCGGCa---------CCGGCGgCaCGac -5'
23797 5' -62.8 NC_005261.1 + 28844 0.77 0.128731
Target:  5'- gCUgAGGCGGCCGUcguGGCCGCCGcccuugagGCUGc -3'
miRNA:   3'- -GGgUUCGCCGGCA---CCGGCGGCa-------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 29242 0.66 0.581244
Target:  5'- gCCGcGGC-GCCGcgcgacgGGCCGCCGccGCUGg -3'
miRNA:   3'- gGGU-UCGcCGGCa------CCGGCGGCa-CGAC- -5'
23797 5' -62.8 NC_005261.1 + 29310 0.66 0.58027
Target:  5'- gCCCGgcAGCGcGCCGccGCCGCCcggccgcGUGCg- -3'
miRNA:   3'- -GGGU--UCGC-CGGCacCGGCGG-------CACGac -5'
23797 5' -62.8 NC_005261.1 + 29414 0.69 0.399614
Target:  5'- gCUAcgcGGCGGCCGcggGGCCcgcgGCCGUGUUc -3'
miRNA:   3'- gGGU---UCGCCGGCa--CCGG----CGGCACGAc -5'
23797 5' -62.8 NC_005261.1 + 29699 0.66 0.590997
Target:  5'- aCguGGCGGCCugcGUGGCCaugaGCCGccGCUa -3'
miRNA:   3'- gGguUCGCCGG---CACCGG----CGGCa-CGAc -5'
23797 5' -62.8 NC_005261.1 + 30189 0.73 0.241181
Target:  5'- gCCgAGGCGGCCGccgcgcuggaGGCgGCCGcGCUGg -3'
miRNA:   3'- -GGgUUCGCCGGCa---------CCGgCGGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 30757 0.68 0.477349
Target:  5'- gCCCGGGCccuaguccgGGCCGgagcccGGCCGCggcgguggagGUGCUGg -3'
miRNA:   3'- -GGGUUCG---------CCGGCa-----CCGGCGg---------CACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.