miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 30894 0.68 0.450569
Target:  5'- gCCCGAGCucgGGCUGgGGCCGcCCG-GCc- -3'
miRNA:   3'- -GGGUUCG---CCGGCaCCGGC-GGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 31053 0.71 0.302004
Target:  5'- cCCCAGcGCGGCgG-GaGCCGCCGcugcccgcccgcgUGCUGg -3'
miRNA:   3'- -GGGUU-CGCCGgCaC-CGGCGGC-------------ACGAC- -5'
23797 5' -62.8 NC_005261.1 + 31105 0.67 0.514225
Target:  5'- gCCC-GGCGGCCcc-GCCGCCGacgGCg- -3'
miRNA:   3'- -GGGuUCGCCGGcacCGGCGGCa--CGac -5'
23797 5' -62.8 NC_005261.1 + 31450 0.78 0.114737
Target:  5'- gCCCGgcgaggacgagcgccGGCGGCCugaGUGGCCGCCgGUGCg- -3'
miRNA:   3'- -GGGU---------------UCGCCGG---CACCGGCGG-CACGac -5'
23797 5' -62.8 NC_005261.1 + 31819 0.79 0.088177
Target:  5'- gCCUGAGCGGCgCGcgcUGGCgcgCGCCGUGCUGg -3'
miRNA:   3'- -GGGUUCGCCG-GC---ACCG---GCGGCACGAC- -5'
23797 5' -62.8 NC_005261.1 + 32211 0.71 0.315641
Target:  5'- gCCCGAcgagcugccggccGCGGCgGUGGCCuucugcgcgGCCGcgcUGCUGg -3'
miRNA:   3'- -GGGUU-------------CGCCGgCACCGG---------CGGC---ACGAC- -5'
23797 5' -62.8 NC_005261.1 + 33162 0.69 0.433182
Target:  5'- aCCGcgcGGCGGCCGa-GCCGCCGUccGCc- -3'
miRNA:   3'- gGGU---UCGCCGGCacCGGCGGCA--CGac -5'
23797 5' -62.8 NC_005261.1 + 34272 0.67 0.55221
Target:  5'- gCCCGuagaccucacGGCGGCCGgcggGGaCGCCGggaGCg- -3'
miRNA:   3'- -GGGU----------UCGCCGGCa---CCgGCGGCa--CGac -5'
23797 5' -62.8 NC_005261.1 + 34336 0.73 0.252588
Target:  5'- cCCCAAGgGGCCGgGGCgGCCGacgggGCc- -3'
miRNA:   3'- -GGGUUCgCCGGCaCCGgCGGCa----CGac -5'
23797 5' -62.8 NC_005261.1 + 35954 0.72 0.269911
Target:  5'- gCCCGAGCccggccaGGCCGcucGGCCGCUGUaGCg- -3'
miRNA:   3'- -GGGUUCG-------CCGGCa--CCGGCGGCA-CGac -5'
23797 5' -62.8 NC_005261.1 + 37648 0.66 0.590997
Target:  5'- cCCCAAGCccuuGGCCuUGGCCcCCGaGCc- -3'
miRNA:   3'- -GGGUUCG----CCGGcACCGGcGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 38191 0.66 0.571525
Target:  5'- gCCUggGCGcGCCGcGGCgUGCUGcUGCUc -3'
miRNA:   3'- -GGGuuCGC-CGGCaCCG-GCGGC-ACGAc -5'
23797 5' -62.8 NC_005261.1 + 38263 0.67 0.514225
Target:  5'- gCCAgccugggcugggGGCGGCUG-GuGCaCGCgGUGCUGg -3'
miRNA:   3'- gGGU------------UCGCCGGCaC-CG-GCGgCACGAC- -5'
23797 5' -62.8 NC_005261.1 + 38356 0.69 0.424636
Target:  5'- gCCCAgcgggccuuuggGGCGGCCGggaagcGGCaCcUCGUGCUGa -3'
miRNA:   3'- -GGGU------------UCGCCGGCa-----CCG-GcGGCACGAC- -5'
23797 5' -62.8 NC_005261.1 + 38932 0.72 0.270525
Target:  5'- gCCAagccGGCGGCCGggcgGGCCGCgGcgcgcggGCUGc -3'
miRNA:   3'- gGGU----UCGCCGGCa---CCGGCGgCa------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 39370 0.66 0.571525
Target:  5'- cCUCAucGGCGGCCGgggagGGCgGCCcugGCg- -3'
miRNA:   3'- -GGGU--UCGCCGGCa----CCGgCGGca-CGac -5'
23797 5' -62.8 NC_005261.1 + 39791 0.68 0.441827
Target:  5'- gCCGGGgGGCgGcgcGGCCGCCG-GCg- -3'
miRNA:   3'- gGGUUCgCCGgCa--CCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 39866 0.68 0.459405
Target:  5'- gCCCAGGCacacGGCCagcaGGCCGCgCGcgcgGCUGu -3'
miRNA:   3'- -GGGUUCG----CCGGca--CCGGCG-GCa---CGAC- -5'
23797 5' -62.8 NC_005261.1 + 40242 0.66 0.561845
Target:  5'- gCCCGGG-GGCCGUgagcgccauggcGGCgGCCGcgGCg- -3'
miRNA:   3'- -GGGUUCgCCGGCA------------CCGgCGGCa-CGac -5'
23797 5' -62.8 NC_005261.1 + 42667 0.78 0.116478
Target:  5'- gCCAagcGGCGGCCG-GGCCGCCGccgGCa- -3'
miRNA:   3'- gGGU---UCGCCGGCaCCGGCGGCa--CGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.