miRNA display CGI


Results 61 - 80 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 42909 0.67 0.523628
Target:  5'- aCCC-GGCGcuCCGgGGCCGCCGgGCg- -3'
miRNA:   3'- -GGGuUCGCc-GGCaCCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 43413 0.69 0.433182
Target:  5'- gCCGggGGCGGCCuccGCCGCCGgcggggaGCUGg -3'
miRNA:   3'- gGGU--UCGCCGGcacCGGCGGCa------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 44007 0.68 0.441827
Target:  5'- uCCCAGcccggcuucggcGCGGCgGgcGGCCGCCGcGCg- -3'
miRNA:   3'- -GGGUU------------CGCCGgCa-CCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 44244 0.67 0.495631
Target:  5'- gCCCAGcgcGCGGCCGacGCCGCgGcGCg- -3'
miRNA:   3'- -GGGUU---CGCCGGCacCGGCGgCaCGac -5'
23797 5' -62.8 NC_005261.1 + 44285 0.66 0.581244
Target:  5'- gCCCGccgccAGCGGCgGgccagGGCCGCUGcccGCg- -3'
miRNA:   3'- -GGGU-----UCGCCGgCa----CCGGCGGCa--CGac -5'
23797 5' -62.8 NC_005261.1 + 47615 0.79 0.100125
Target:  5'- cCCCugcggGGGCGGCCGcGGCCGCCGcGCg- -3'
miRNA:   3'- -GGG-----UUCGCCGGCaCCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 48767 0.66 0.561845
Target:  5'- cCCCGGGCGGCCcgacgagcucGGCgauCGCCG-GCUc -3'
miRNA:   3'- -GGGUUCGCCGGca--------CCG---GCGGCaCGAc -5'
23797 5' -62.8 NC_005261.1 + 50949 0.67 0.504891
Target:  5'- uUCUAcGCGGCCGUGGUCGacuaCG-GCg- -3'
miRNA:   3'- -GGGUuCGCCGGCACCGGCg---GCaCGac -5'
23797 5' -62.8 NC_005261.1 + 51249 0.73 0.235641
Target:  5'- cUCCAGGCGGCCGU-GCUGCU--GCUGu -3'
miRNA:   3'- -GGGUUCGCCGGCAcCGGCGGcaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 51437 0.74 0.209524
Target:  5'- cCCCGGGCGcGCCGUgaugaucaaccuGGCCGgCGgucUGCUGg -3'
miRNA:   3'- -GGGUUCGC-CGGCA------------CCGGCgGC---ACGAC- -5'
23797 5' -62.8 NC_005261.1 + 51746 0.71 0.309448
Target:  5'- cCCCGGGCuGCCGcUGGCCGUgaaGCUGg -3'
miRNA:   3'- -GGGUUCGcCGGC-ACCGGCGgcaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 51789 0.78 0.116478
Target:  5'- gCCCu-GCuGGCCGUGGCCauGCuCGUGCUGc -3'
miRNA:   3'- -GGGuuCG-CCGGCACCGG--CG-GCACGAC- -5'
23797 5' -62.8 NC_005261.1 + 51911 0.67 0.54837
Target:  5'- gCCCGggcgcgcAGCGGCCGcGGCCuggucccgcucgucGCCG-GCg- -3'
miRNA:   3'- -GGGU-------UCGCCGGCaCCGG--------------CGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 53520 0.8 0.075626
Target:  5'- gCCCGAa-GGCUGUGGCUGCCGUGUUGc -3'
miRNA:   3'- -GGGUUcgCCGGCACCGGCGGCACGAC- -5'
23797 5' -62.8 NC_005261.1 + 53566 0.71 0.296017
Target:  5'- gCCCAggcgcacuAGCGGCCGcgGGCCGgCG-GCg- -3'
miRNA:   3'- -GGGU--------UCGCCGGCa-CCGGCgGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 53654 0.7 0.375556
Target:  5'- uCgCAGGCGGCC-UGGCCGCgGgucGCg- -3'
miRNA:   3'- -GgGUUCGCCGGcACCGGCGgCa--CGac -5'
23797 5' -62.8 NC_005261.1 + 55447 0.72 0.283044
Target:  5'- cUCCGAGCGGCgCGgugGGCCaGUCGUcGCUu -3'
miRNA:   3'- -GGGUUCGCCG-GCa--CCGG-CGGCA-CGAc -5'
23797 5' -62.8 NC_005261.1 + 60408 0.7 0.345034
Target:  5'- gCCGGGcCGGcCCGggcccggGGCCGCCGcGCUc -3'
miRNA:   3'- gGGUUC-GCC-GGCa------CCGGCGGCaCGAc -5'
23797 5' -62.8 NC_005261.1 + 63746 0.73 0.252588
Target:  5'- gCCGcGGCGG-CGUaGGCCGCCGUGUa- -3'
miRNA:   3'- gGGU-UCGCCgGCA-CCGGCGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 64101 0.66 0.61058
Target:  5'- gCCCAcaaaguGCGGCaCG-GGCgGCaCGUGCc- -3'
miRNA:   3'- -GGGUu-----CGCCG-GCaCCGgCG-GCACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.