miRNA display CGI


Results 81 - 100 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 64690 0.67 0.504891
Target:  5'- aCCGGGCGcgucCCGgGGCCGCCGccGCg- -3'
miRNA:   3'- gGGUUCGCc---GGCaCCGGCGGCa-CGac -5'
23797 5' -62.8 NC_005261.1 + 65464 0.66 0.600778
Target:  5'- gCUCGAGCGGCaUGUuugGGuuGCCGgGCg- -3'
miRNA:   3'- -GGGUUCGCCG-GCA---CCggCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 65529 0.71 0.316335
Target:  5'- aCCCAGcGCGGCCGcgcgGGCagcaGCgCGUGCc- -3'
miRNA:   3'- -GGGUU-CGCCGGCa---CCGg---CG-GCACGac -5'
23797 5' -62.8 NC_005261.1 + 66924 0.68 0.471029
Target:  5'- gCCCAggagggcgucgaaGGCGGCCGcguacaGGCCGuuGUcguccgaccgcaccuGCUGg -3'
miRNA:   3'- -GGGU-------------UCGCCGGCa-----CCGGCggCA---------------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 68755 0.67 0.514225
Target:  5'- gCCCGccGGgGcGCCGcgGaGCCGCCGUGUc- -3'
miRNA:   3'- -GGGU--UCgC-CGGCa-C-CGGCGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 68862 0.77 0.122462
Target:  5'- gCCCucugccGCGGCUGUGcGCCGUCGUGCg- -3'
miRNA:   3'- -GGGuu----CGCCGGCAC-CGGCGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 69509 0.67 0.523628
Target:  5'- gCC-GGCGGCg--GGCUGCCGgaGCUGg -3'
miRNA:   3'- gGGuUCGCCGgcaCCGGCGGCa-CGAC- -5'
23797 5' -62.8 NC_005261.1 + 70811 0.67 0.542625
Target:  5'- gUCCGcgccGGCGGCCccgGGCgCGCCG-GCg- -3'
miRNA:   3'- -GGGU----UCGCCGGca-CCG-GCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 70861 0.71 0.302004
Target:  5'- gUCCAgGGCGGCCGccguggcgUGGCCggcggugcacaugGCCGUGCa- -3'
miRNA:   3'- -GGGU-UCGCCGGC--------ACCGG-------------CGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 70995 0.66 0.61058
Target:  5'- gCgCGGGCGGCCGccaGGCCagcucGCCGcGCa- -3'
miRNA:   3'- -GgGUUCGCCGGCa--CCGG-----CGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 74120 0.68 0.486449
Target:  5'- aCCC-GGUGGUCcUGG-CGCCgGUGCUGg -3'
miRNA:   3'- -GGGuUCGCCGGcACCgGCGG-CACGAC- -5'
23797 5' -62.8 NC_005261.1 + 74688 0.67 0.533097
Target:  5'- aCCGcGCGGgaGcUGGCCGCCGcGCg- -3'
miRNA:   3'- gGGUuCGCCggC-ACCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 74811 0.83 0.049995
Target:  5'- gCCCGcguGGCGGagGUGGCCGCCGUGCUc -3'
miRNA:   3'- -GGGU---UCGCCggCACCGGCGGCACGAc -5'
23797 5' -62.8 NC_005261.1 + 75035 0.66 0.590997
Target:  5'- aCCCuGGCGGCCGaccugcUGGCCaUgGUGUa- -3'
miRNA:   3'- -GGGuUCGCCGGC------ACCGGcGgCACGac -5'
23797 5' -62.8 NC_005261.1 + 75200 0.67 0.504891
Target:  5'- aCCUucauGGCGGCCGcGGUgGCgGcGCUGc -3'
miRNA:   3'- -GGGu---UCGCCGGCaCCGgCGgCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 75475 0.66 0.61058
Target:  5'- gCCGGGCGGCgGcgcgGGCCGCUacgagcgcgggGcGCUGn -3'
miRNA:   3'- gGGUUCGCCGgCa---CCGGCGG-----------CaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 75515 0.73 0.235641
Target:  5'- --gAGGCGcacGCCGUGGUCGCCGcGCUGc -3'
miRNA:   3'- gggUUCGC---CGGCACCGGCGGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 79713 0.66 0.561845
Target:  5'- -gCGGGCGGCUGUagcagacGCCGCCGgGCg- -3'
miRNA:   3'- ggGUUCGCCGGCAc------CGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 79813 0.66 0.568616
Target:  5'- cCCCAacaugcgcgcGGCGGCgCGgcgGccagcgcagcgcuaGCCGCCGcGCUGg -3'
miRNA:   3'- -GGGU----------UCGCCG-GCa--C--------------CGGCGGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 80023 0.67 0.514225
Target:  5'- aCCCGcuuguuGGCGucGCCGUcGCCGCCGUcGCc- -3'
miRNA:   3'- -GGGU------UCGC--CGGCAcCGGCGGCA-CGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.