miRNA display CGI


Results 21 - 40 of 165 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 118388 0.71 0.308765
Target:  5'- gCCCGaggcgcuGGCGGCCGcgGGCgccgcaGCCGcGCUGg -3'
miRNA:   3'- -GGGU-------UCGCCGGCa-CCGg-----CGGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 118052 0.7 0.350245
Target:  5'- gCCCGcgcuGGCGGCCGcGGCagcgGCCGcagccgcgcucgucUGCUGg -3'
miRNA:   3'- -GGGU----UCGCCGGCaCCGg---CGGC--------------ACGAC- -5'
23797 5' -62.8 NC_005261.1 + 117726 0.66 0.561845
Target:  5'- cCCgCAAGCGGCCGcgcgcugGcGCCGCCGc---- -3'
miRNA:   3'- -GG-GUUCGCCGGCa------C-CGGCGGCacgac -5'
23797 5' -62.8 NC_005261.1 + 116713 0.67 0.533097
Target:  5'- gCCGccAGCuGGCCGacgucGCCGCCcUGCUGa -3'
miRNA:   3'- gGGU--UCG-CCGGCac---CGGCGGcACGAC- -5'
23797 5' -62.8 NC_005261.1 + 116006 0.72 0.258456
Target:  5'- gCCCgAGGCGGCC-UGaGCCGCCGacgGCg- -3'
miRNA:   3'- -GGG-UUCGCCGGcAC-CGGCGGCa--CGac -5'
23797 5' -62.8 NC_005261.1 + 114345 0.73 0.230207
Target:  5'- gCUCGAGCGGCgCGUGGCCGCg--GCc- -3'
miRNA:   3'- -GGGUUCGCCG-GCACCGGCGgcaCGac -5'
23797 5' -62.8 NC_005261.1 + 113564 0.77 0.128731
Target:  5'- aCCGcgagcAGUGGUCgGUGGCCGCCGcGCUGg -3'
miRNA:   3'- gGGU-----UCGCCGG-CACCGGCGGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 107820 0.7 0.352495
Target:  5'- gCCCuAGCGGCCGccGCCGCCucUGCc- -3'
miRNA:   3'- -GGGuUCGCCGGCacCGGCGGc-ACGac -5'
23797 5' -62.8 NC_005261.1 + 107301 0.69 0.424636
Target:  5'- cUCCGccGCGGCCacGGCCGCCGcgUGCa- -3'
miRNA:   3'- -GGGUu-CGCCGGcaCCGGCGGC--ACGac -5'
23797 5' -62.8 NC_005261.1 + 106564 0.69 0.391486
Target:  5'- gCCGGcGCGcGCCGgccccggGGCCGCCGcGCg- -3'
miRNA:   3'- gGGUU-CGC-CGGCa------CCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 106277 0.66 0.590997
Target:  5'- gCCGGGCGGcCCGUGcaaacGCCGUCGaccucgGCg- -3'
miRNA:   3'- gGGUUCGCC-GGCAC-----CGGCGGCa-----CGac -5'
23797 5' -62.8 NC_005261.1 + 106231 0.69 0.39635
Target:  5'- gCCUGGcGCGGCCGccgcgcccuaccgGGCCGCCGccgccGCUGc -3'
miRNA:   3'- -GGGUU-CGCCGGCa------------CCGGCGGCa----CGAC- -5'
23797 5' -62.8 NC_005261.1 + 105119 0.73 0.24683
Target:  5'- gCCCGcGCGGgCGcgGGCCGCCG-GCg- -3'
miRNA:   3'- -GGGUuCGCCgGCa-CCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 104702 0.69 0.399614
Target:  5'- cCCCGaagAGCGGCUGgacggccgagGGCgCGUCGUGCc- -3'
miRNA:   3'- -GGGU---UCGCCGGCa---------CCG-GCGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 104515 0.67 0.504891
Target:  5'- uCCguGGCGGCCGcgacggcGGCCGCCaccagGCg- -3'
miRNA:   3'- -GGguUCGCCGGCa------CCGGCGGca---CGac -5'
23797 5' -62.8 NC_005261.1 + 104337 0.67 0.55221
Target:  5'- gUCC-AGCGGCC--GGCCGUCGcGCa- -3'
miRNA:   3'- -GGGuUCGCCGGcaCCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 103781 0.67 0.504891
Target:  5'- aCCCAGGCcgcgGGCCGUcuucGGUgugCGCCGuUGCg- -3'
miRNA:   3'- -GGGUUCG----CCGGCA----CCG---GCGGC-ACGac -5'
23797 5' -62.8 NC_005261.1 + 103369 0.68 0.468333
Target:  5'- cCCCAGcuCGGCCGcGcGCCGCCGcGCc- -3'
miRNA:   3'- -GGGUUc-GCCGGCaC-CGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 102947 0.67 0.49471
Target:  5'- gCCGcugcggcGGCGGCCGcGGgCGCCGcggGCUc -3'
miRNA:   3'- gGGU-------UCGCCGGCaCCgGCGGCa--CGAc -5'
23797 5' -62.8 NC_005261.1 + 102677 0.68 0.485535
Target:  5'- gCCCAGcgccgcguccgccGCGGCCGUcgcuGCCGCCGU-CUc -3'
miRNA:   3'- -GGGUU-------------CGCCGGCAc---CGGCGGCAcGAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.