miRNA display CGI


Results 41 - 60 of 165 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 102220 0.7 0.383466
Target:  5'- aCgCAAGCacGGCCucgaUGGCCGCCGUcgcccGCUGc -3'
miRNA:   3'- -GgGUUCG--CCGGc---ACCGGCGGCA-----CGAC- -5'
23797 5' -62.8 NC_005261.1 + 101576 0.68 0.477349
Target:  5'- gCUCGGcGCGcGCCGUGGCCuCCGcGCg- -3'
miRNA:   3'- -GGGUU-CGC-CGGCACCGGcGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 100715 0.66 0.600778
Target:  5'- gCCCGAgccGCGGCCGc-GCCGCgCGcGCg- -3'
miRNA:   3'- -GGGUU---CGCCGGCacCGGCG-GCaCGac -5'
23797 5' -62.8 NC_005261.1 + 100072 0.67 0.55221
Target:  5'- gCCCGggGGCGcGCCGcgccccucGCCGCCGccGCUGc -3'
miRNA:   3'- -GGGU--UCGC-CGGCac------CGGCGGCa-CGAC- -5'
23797 5' -62.8 NC_005261.1 + 99850 0.71 0.296017
Target:  5'- gCCC-AGCGGCaccGGCCGCCGcGCg- -3'
miRNA:   3'- -GGGuUCGCCGgcaCCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 99467 0.68 0.468333
Target:  5'- aCCCGcGGCGGCgcUGGCCGCUGcgGCc- -3'
miRNA:   3'- -GGGU-UCGCCGgcACCGGCGGCa-CGac -5'
23797 5' -62.8 NC_005261.1 + 98778 0.69 0.391486
Target:  5'- gCCGc-CGGCCGccGGCCGCgCGUGCg- -3'
miRNA:   3'- gGGUucGCCGGCa-CCGGCG-GCACGac -5'
23797 5' -62.8 NC_005261.1 + 98743 0.66 0.571525
Target:  5'- gCCGcGCGGgCGuUGGCCGCgCGguugccGCUGc -3'
miRNA:   3'- gGGUuCGCCgGC-ACCGGCG-GCa-----CGAC- -5'
23797 5' -62.8 NC_005261.1 + 98665 0.67 0.495631
Target:  5'- cCCCAGGCGagggcgggcuccGCCGgGGCCggaggcgcgGCCGgaGCUGg -3'
miRNA:   3'- -GGGUUCGC------------CGGCaCCGG---------CGGCa-CGAC- -5'
23797 5' -62.8 NC_005261.1 + 98139 0.68 0.459405
Target:  5'- aCC-GGCGGCCGUcggcggcaaGGCCGCgGgcgGCg- -3'
miRNA:   3'- gGGuUCGCCGGCA---------CCGGCGgCa--CGac -5'
23797 5' -62.8 NC_005261.1 + 97892 0.66 0.561845
Target:  5'- cCCCGggccGGCGGaCCGUcuGGgCGCCGgGCg- -3'
miRNA:   3'- -GGGU----UCGCC-GGCA--CCgGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 96137 0.68 0.441827
Target:  5'- aCCUGcggcGGCGGCaCGagaaGGCCGUCGUGCc- -3'
miRNA:   3'- -GGGU----UCGCCG-GCa---CCGGCGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 93225 0.68 0.486449
Target:  5'- gCCAGcGCGGCaaaaaaGcGGCCGCCGUcGCc- -3'
miRNA:   3'- gGGUU-CGCCGg-----CaCCGGCGGCA-CGac -5'
23797 5' -62.8 NC_005261.1 + 91477 0.74 0.196954
Target:  5'- uCCCAgcGGCGccGCCGcGGCCGCCGcccgccccgcgcgccUGCUGg -3'
miRNA:   3'- -GGGU--UCGC--CGGCaCCGGCGGC---------------ACGAC- -5'
23797 5' -62.8 NC_005261.1 + 91168 0.74 0.218111
Target:  5'- gCCCGGGCGgcagcucccGCCG-GGCuucgcgcgcuucggCGCCGUGCUGg -3'
miRNA:   3'- -GGGUUCGC---------CGGCaCCG--------------GCGGCACGAC- -5'
23797 5' -62.8 NC_005261.1 + 91130 0.7 0.383466
Target:  5'- gCC--GCGGCCGaGGCCucaGCCGUGCc- -3'
miRNA:   3'- gGGuuCGCCGGCaCCGG---CGGCACGac -5'
23797 5' -62.8 NC_005261.1 + 90767 0.68 0.459405
Target:  5'- cCCCgAGGCcGCCGaGGCCGCUGcgGCg- -3'
miRNA:   3'- -GGG-UUCGcCGGCaCCGGCGGCa-CGac -5'
23797 5' -62.8 NC_005261.1 + 89427 0.71 0.309448
Target:  5'- ----cGCGGCCGccgGGCuccccgcgccCGCCGUGCUGg -3'
miRNA:   3'- ggguuCGCCGGCa--CCG----------GCGGCACGAC- -5'
23797 5' -62.8 NC_005261.1 + 88777 0.68 0.468333
Target:  5'- cUCCu--CGGCCcUGGCCGCCG-GCg- -3'
miRNA:   3'- -GGGuucGCCGGcACCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 87067 0.72 0.276728
Target:  5'- gCCAccGCGGCCG-GGCCcagcacguaGCCGUGCa- -3'
miRNA:   3'- gGGUu-CGCCGGCaCCGG---------CGGCACGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.