Results 81 - 100 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 68755 | 0.67 | 0.514225 |
Target: 5'- gCCCGccGGgGcGCCGcgGaGCCGCCGUGUc- -3' miRNA: 3'- -GGGU--UCgC-CGGCa-C-CGGCGGCACGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 66924 | 0.68 | 0.471029 |
Target: 5'- gCCCAggagggcgucgaaGGCGGCCGcguacaGGCCGuuGUcguccgaccgcaccuGCUGg -3' miRNA: 3'- -GGGU-------------UCGCCGGCa-----CCGGCggCA---------------CGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 65529 | 0.71 | 0.316335 |
Target: 5'- aCCCAGcGCGGCCGcgcgGGCagcaGCgCGUGCc- -3' miRNA: 3'- -GGGUU-CGCCGGCa---CCGg---CG-GCACGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 65464 | 0.66 | 0.600778 |
Target: 5'- gCUCGAGCGGCaUGUuugGGuuGCCGgGCg- -3' miRNA: 3'- -GGGUUCGCCG-GCA---CCggCGGCaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 64690 | 0.67 | 0.504891 |
Target: 5'- aCCGGGCGcgucCCGgGGCCGCCGccGCg- -3' miRNA: 3'- gGGUUCGCc---GGCaCCGGCGGCa-CGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 64101 | 0.66 | 0.61058 |
Target: 5'- gCCCAcaaaguGCGGCaCG-GGCgGCaCGUGCc- -3' miRNA: 3'- -GGGUu-----CGCCG-GCaCCGgCG-GCACGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 63746 | 0.73 | 0.252588 |
Target: 5'- gCCGcGGCGG-CGUaGGCCGCCGUGUa- -3' miRNA: 3'- gGGU-UCGCCgGCA-CCGGCGGCACGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 60408 | 0.7 | 0.345034 |
Target: 5'- gCCGGGcCGGcCCGggcccggGGCCGCCGcGCUc -3' miRNA: 3'- gGGUUC-GCC-GGCa------CCGGCGGCaCGAc -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 55447 | 0.72 | 0.283044 |
Target: 5'- cUCCGAGCGGCgCGgugGGCCaGUCGUcGCUu -3' miRNA: 3'- -GGGUUCGCCG-GCa--CCGG-CGGCA-CGAc -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 53654 | 0.7 | 0.375556 |
Target: 5'- uCgCAGGCGGCC-UGGCCGCgGgucGCg- -3' miRNA: 3'- -GgGUUCGCCGGcACCGGCGgCa--CGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 53566 | 0.71 | 0.296017 |
Target: 5'- gCCCAggcgcacuAGCGGCCGcgGGCCGgCG-GCg- -3' miRNA: 3'- -GGGU--------UCGCCGGCa-CCGGCgGCaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 53520 | 0.8 | 0.075626 |
Target: 5'- gCCCGAa-GGCUGUGGCUGCCGUGUUGc -3' miRNA: 3'- -GGGUUcgCCGGCACCGGCGGCACGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 51911 | 0.67 | 0.54837 |
Target: 5'- gCCCGggcgcgcAGCGGCCGcGGCCuggucccgcucgucGCCG-GCg- -3' miRNA: 3'- -GGGU-------UCGCCGGCaCCGG--------------CGGCaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 51789 | 0.78 | 0.116478 |
Target: 5'- gCCCu-GCuGGCCGUGGCCauGCuCGUGCUGc -3' miRNA: 3'- -GGGuuCG-CCGGCACCGG--CG-GCACGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 51746 | 0.71 | 0.309448 |
Target: 5'- cCCCGGGCuGCCGcUGGCCGUgaaGCUGg -3' miRNA: 3'- -GGGUUCGcCGGC-ACCGGCGgcaCGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 51437 | 0.74 | 0.209524 |
Target: 5'- cCCCGGGCGcGCCGUgaugaucaaccuGGCCGgCGgucUGCUGg -3' miRNA: 3'- -GGGUUCGC-CGGCA------------CCGGCgGC---ACGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 51249 | 0.73 | 0.235641 |
Target: 5'- cUCCAGGCGGCCGU-GCUGCU--GCUGu -3' miRNA: 3'- -GGGUUCGCCGGCAcCGGCGGcaCGAC- -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 50949 | 0.67 | 0.504891 |
Target: 5'- uUCUAcGCGGCCGUGGUCGacuaCG-GCg- -3' miRNA: 3'- -GGGUuCGCCGGCACCGGCg---GCaCGac -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 48767 | 0.66 | 0.561845 |
Target: 5'- cCCCGGGCGGCCcgacgagcucGGCgauCGCCG-GCUc -3' miRNA: 3'- -GGGUUCGCCGGca--------CCG---GCGGCaCGAc -5' |
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23797 | 5' | -62.8 | NC_005261.1 | + | 47615 | 0.79 | 0.100125 |
Target: 5'- cCCCugcggGGGCGGCCGcGGCCGCCGcGCg- -3' miRNA: 3'- -GGG-----UUCGCCGGCaCCGGCGGCaCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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