miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23797 5' -62.8 NC_005261.1 + 75475 0.66 0.61058
Target:  5'- gCCGGGCGGCgGcgcgGGCCGCUacgagcgcgggGcGCUGn -3'
miRNA:   3'- gGGUUCGCCGgCa---CCGGCGG-----------CaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 132052 0.76 0.152696
Target:  5'- cCCCGgggagguGGCGGCCGaggucgcGGCCGCCGUcgccGCUGc -3'
miRNA:   3'- -GGGU-------UCGCCGGCa------CCGGCGGCA----CGAC- -5'
23797 5' -62.8 NC_005261.1 + 121766 0.75 0.190463
Target:  5'- gCCCGAGCgcggugggguGGCCGcGGCCGgCGgGCUGg -3'
miRNA:   3'- -GGGUUCG----------CCGGCaCCGGCgGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 91477 0.74 0.196954
Target:  5'- uCCCAgcGGCGccGCCGcGGCCGCCGcccgccccgcgcgccUGCUGg -3'
miRNA:   3'- -GGGU--UCGC--CGGCaCCGGCGGC---------------ACGAC- -5'
23797 5' -62.8 NC_005261.1 + 3441 0.74 0.199795
Target:  5'- gUCCAGGCGGgCGcgcgGGCCGCCGcGCc- -3'
miRNA:   3'- -GGGUUCGCCgGCa---CCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 51437 0.74 0.209524
Target:  5'- cCCCGGGCGcGCCGUgaugaucaaccuGGCCGgCGgucUGCUGg -3'
miRNA:   3'- -GGGUUCGC-CGGCA------------CCGGCgGC---ACGAC- -5'
23797 5' -62.8 NC_005261.1 + 23883 0.74 0.214539
Target:  5'- cCCCGGGCgGGCCGgcuagggugGGCuCGCUGgGCUGg -3'
miRNA:   3'- -GGGUUCG-CCGGCa--------CCG-GCGGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 91168 0.74 0.218111
Target:  5'- gCCCGGGCGgcagcucccGCCG-GGCuucgcgcgcuucggCGCCGUGCUGg -3'
miRNA:   3'- -GGGUUCGC---------CGGCaCCG--------------GCGGCACGAC- -5'
23797 5' -62.8 NC_005261.1 + 114345 0.73 0.230207
Target:  5'- gCUCGAGCGGCgCGUGGCCGCg--GCc- -3'
miRNA:   3'- -GGGUUCGCCG-GCACCGGCGgcaCGac -5'
23797 5' -62.8 NC_005261.1 + 135580 0.76 0.14572
Target:  5'- cCCCAucGUGGCCacGGCCggcGCCGUGCUGg -3'
miRNA:   3'- -GGGUu-CGCCGGcaCCGG---CGGCACGAC- -5'
23797 5' -62.8 NC_005261.1 + 113564 0.77 0.128731
Target:  5'- aCCGcgagcAGUGGUCgGUGGCCGCCGcGCUGg -3'
miRNA:   3'- gGGU-----UCGCCGG-CACCGGCGGCaCGAC- -5'
23797 5' -62.8 NC_005261.1 + 28844 0.77 0.128731
Target:  5'- gCUgAGGCGGCCGUcguGGCCGCCGcccuugagGCUGc -3'
miRNA:   3'- -GGgUUCGCCGGCA---CCGGCGGCa-------CGAC- -5'
23797 5' -62.8 NC_005261.1 + 53520 0.8 0.075626
Target:  5'- gCCCGAa-GGCUGUGGCUGCCGUGUUGc -3'
miRNA:   3'- -GGGUUcgCCGGCACCGGCGGCACGAC- -5'
23797 5' -62.8 NC_005261.1 + 31819 0.79 0.088177
Target:  5'- gCCUGAGCGGCgCGcgcUGGCgcgCGCCGUGCUGg -3'
miRNA:   3'- -GGGUUCGCCG-GC---ACCG---GCGGCACGAC- -5'
23797 5' -62.8 NC_005261.1 + 7663 0.79 0.100125
Target:  5'- uUCAAGCGGCCGcGGCCGCCGccUGUg- -3'
miRNA:   3'- gGGUUCGCCGGCaCCGGCGGC--ACGac -5'
23797 5' -62.8 NC_005261.1 + 47615 0.79 0.100125
Target:  5'- cCCCugcggGGGCGGCCGcGGCCGCCGcGCg- -3'
miRNA:   3'- -GGG-----UUCGCCGGCaCCGGCGGCaCGac -5'
23797 5' -62.8 NC_005261.1 + 31450 0.78 0.114737
Target:  5'- gCCCGgcgaggacgagcgccGGCGGCCugaGUGGCCGCCgGUGCg- -3'
miRNA:   3'- -GGGU---------------UCGCCGG---CACCGGCGG-CACGac -5'
23797 5' -62.8 NC_005261.1 + 42667 0.78 0.116478
Target:  5'- gCCAagcGGCGGCCG-GGCCGCCGccgGCa- -3'
miRNA:   3'- gGGU---UCGCCGGCaCCGGCGGCa--CGac -5'
23797 5' -62.8 NC_005261.1 + 51789 0.78 0.116478
Target:  5'- gCCCu-GCuGGCCGUGGCCauGCuCGUGCUGc -3'
miRNA:   3'- -GGGuuCG-CCGGCACCGG--CG-GCACGAC- -5'
23797 5' -62.8 NC_005261.1 + 68862 0.77 0.122462
Target:  5'- gCCCucugccGCGGCUGUGcGCCGUCGUGCg- -3'
miRNA:   3'- -GGGuu----CGCCGGCAC-CGGCGGCACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.