Results 101 - 120 of 165 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 138035 | 0.7 | 0.360069 |
Target: 5'- gCCC-GGCGGCgGUGGCgGCgGUgGCg- -3' miRNA: 3'- -GGGuUCGCCGgCACCGgCGgCA-CGac -5' |
|||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 53654 | 0.7 | 0.375556 |
Target: 5'- uCgCAGGCGGCC-UGGCCGCgGgucGCg- -3' miRNA: 3'- -GgGUUCGCCGGcACCGGCGgCa--CGac -5' |
|||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 102220 | 0.7 | 0.383466 |
Target: 5'- aCgCAAGCacGGCCucgaUGGCCGCCGUcgcccGCUGc -3' miRNA: 3'- -GgGUUCG--CCGGc---ACCGGCGGCA-----CGAC- -5' |
|||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 91130 | 0.7 | 0.383466 |
Target: 5'- gCC--GCGGCCGaGGCCucaGCCGUGCc- -3' miRNA: 3'- gGGuuCGCCGGCaCCGG---CGGCACGac -5' |
|||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 8790 | 0.7 | 0.383466 |
Target: 5'- cCCCucGGCGGCUGcaGCCGCCGaggGCUu -3' miRNA: 3'- -GGGu-UCGCCGGCacCGGCGGCa--CGAc -5' |
|||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 65529 | 0.71 | 0.316335 |
Target: 5'- aCCCAGcGCGGCCGcgcgGGCagcaGCgCGUGCc- -3' miRNA: 3'- -GGGUU-CGCCGGCa---CCGg---CG-GCACGac -5' |
|||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 32211 | 0.71 | 0.315641 |
Target: 5'- gCCCGAcgagcugccggccGCGGCgGUGGCCuucugcgcgGCCGcgcUGCUGg -3' miRNA: 3'- -GGGUU-------------CGCCGgCACCGG---------CGGC---ACGAC- -5' |
|||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 38932 | 0.72 | 0.270525 |
Target: 5'- gCCAagccGGCGGCCGggcgGGCCGCgGcgcgcggGCUGc -3' miRNA: 3'- gGGU----UCGCCGGCa---CCGGCGgCa------CGAC- -5' |
|||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 131860 | 0.72 | 0.276728 |
Target: 5'- gUCCAAGCGGCUGcuugagcuggcGGCCGCCGccGCa- -3' miRNA: 3'- -GGGUUCGCCGGCa----------CCGGCGGCa-CGac -5' |
|||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 87067 | 0.72 | 0.276728 |
Target: 5'- gCCAccGCGGCCG-GGCCcagcacguaGCCGUGCa- -3' miRNA: 3'- gGGUu-CGCCGGCaCCGG---------CGGCACGac -5' |
|||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 55447 | 0.72 | 0.283044 |
Target: 5'- cUCCGAGCGGCgCGgugGGCCaGUCGUcGCUu -3' miRNA: 3'- -GGGUUCGCCG-GCa--CCGG-CGGCA-CGAc -5' |
|||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 12710 | 0.72 | 0.289473 |
Target: 5'- gCCCGAGCGGCuCGggcgcgcgGGcCCGCCG-GCc- -3' miRNA: 3'- -GGGUUCGCCG-GCa-------CC-GGCGGCaCGac -5' |
|||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 99850 | 0.71 | 0.296017 |
Target: 5'- gCCC-AGCGGCaccGGCCGCCGcGCg- -3' miRNA: 3'- -GGGuUCGCCGgcaCCGGCGGCaCGac -5' |
|||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 53566 | 0.71 | 0.296017 |
Target: 5'- gCCCAggcgcacuAGCGGCCGcgGGCCGgCG-GCg- -3' miRNA: 3'- -GGGU--------UCGCCGGCa-CCGGCgGCaCGac -5' |
|||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 70861 | 0.71 | 0.302004 |
Target: 5'- gUCCAgGGCGGCCGccguggcgUGGCCggcggugcacaugGCCGUGCa- -3' miRNA: 3'- -GGGU-UCGCCGGC--------ACCGG-------------CGGCACGac -5' |
|||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 31053 | 0.71 | 0.302004 |
Target: 5'- cCCCAGcGCGGCgG-GaGCCGCCGcugcccgcccgcgUGCUGg -3' miRNA: 3'- -GGGUU-CGCCGgCaC-CGGCGGC-------------ACGAC- -5' |
|||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 135308 | 0.71 | 0.302675 |
Target: 5'- aCC-GGCGuGUCGcccugGGCgGCCGUGCUGg -3' miRNA: 3'- gGGuUCGC-CGGCa----CCGgCGGCACGAC- -5' |
|||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 118388 | 0.71 | 0.308765 |
Target: 5'- gCCCGaggcgcuGGCGGCCGcgGGCgccgcaGCCGcGCUGg -3' miRNA: 3'- -GGGU-------UCGCCGGCa-CCGg-----CGGCaCGAC- -5' |
|||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 89427 | 0.71 | 0.309448 |
Target: 5'- ----cGCGGCCGccgGGCuccccgcgccCGCCGUGCUGg -3' miRNA: 3'- ggguuCGCCGGCa--CCG----------GCGGCACGAC- -5' |
|||||||
23797 | 5' | -62.8 | NC_005261.1 | + | 51746 | 0.71 | 0.309448 |
Target: 5'- cCCCGGGCuGCCGcUGGCCGUgaaGCUGg -3' miRNA: 3'- -GGGUUCGcCGGC-ACCGGCGgcaCGAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home