Results 41 - 60 of 320 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23798 | 3' | -62.5 | NC_005261.1 | + | 116697 | 0.66 | 0.586795 |
Target: 5'- aGCGCcucgcucaUCGGCcgccaGCUGGCCGACGUc-- -3' miRNA: 3'- -CGCGuc------AGCCG-----CGACCGGCUGCGccu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 107949 | 0.66 | 0.61611 |
Target: 5'- aCGUAGUcCGuGCGCggccgcggGGCCaugcaGugGCGGAu -3' miRNA: 3'- cGCGUCA-GC-CGCGa-------CCGG-----CugCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 61030 | 0.66 | 0.63572 |
Target: 5'- gGgGCGGcaccgCGGCaGCUGGCUGGUGCuGGGc -3' miRNA: 3'- -CgCGUCa----GCCG-CGACCGGCUGCG-CCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 68560 | 0.66 | 0.63572 |
Target: 5'- uGCGCGGgcucuUUGaGCGCgucgccGCCGAgGCGGGc -3' miRNA: 3'- -CGCGUC-----AGC-CGCGac----CGGCUgCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 50992 | 0.66 | 0.606319 |
Target: 5'- cCGaCGG-CGGCGCgugGGCgCGGCG-GGAg -3' miRNA: 3'- cGC-GUCaGCCGCGa--CCG-GCUGCgCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 2744 | 0.66 | 0.596545 |
Target: 5'- uGCGCcG-CGGCG--GGCCGuCGCGGc -3' miRNA: 3'- -CGCGuCaGCCGCgaCCGGCuGCGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 138186 | 0.66 | 0.606319 |
Target: 5'- gGgGgGGagGGCGCgGGCgGGCGgGGGg -3' miRNA: 3'- -CgCgUCagCCGCGaCCGgCUGCgCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 76716 | 0.66 | 0.596545 |
Target: 5'- gGCGUcGUCaacugcccGCaGCUGGCCGAcgugcuCGCGGAc -3' miRNA: 3'- -CGCGuCAGc-------CG-CGACCGGCU------GCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 55455 | 0.66 | 0.625913 |
Target: 5'- gGCGCGGUgGGCcagucgucGCUuaacacguccGGuCCGACGCGcGGc -3' miRNA: 3'- -CGCGUCAgCCG--------CGA----------CC-GGCUGCGC-CU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 123175 | 0.66 | 0.625913 |
Target: 5'- cGCGCGGgcgUGGUgGCUGGUguGgGCGGAc -3' miRNA: 3'- -CGCGUCa--GCCG-CGACCGgcUgCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 80860 | 0.66 | 0.586795 |
Target: 5'- cGCGCAccccaGGCGCgcucaGCCG-CGCGGGc -3' miRNA: 3'- -CGCGUcag--CCGCGac---CGGCuGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 117695 | 0.66 | 0.606319 |
Target: 5'- gGCGaGGcCGGCcCUgaGGCCGGCGCGcGGg -3' miRNA: 3'- -CGCgUCaGCCGcGA--CCGGCUGCGC-CU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 102331 | 0.66 | 0.596545 |
Target: 5'- cGCGCAGcCGcGCcaGCUcGGCCGcgucgaAgGCGGAg -3' miRNA: 3'- -CGCGUCaGC-CG--CGA-CCGGC------UgCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 76779 | 0.66 | 0.63572 |
Target: 5'- gGCGCGGaCGcccccGCGCUGGCgCcGCGCGa- -3' miRNA: 3'- -CGCGUCaGC-----CGCGACCG-GcUGCGCcu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 88773 | 0.66 | 0.63572 |
Target: 5'- uGCGCuccUCGGCcCUGGCCGccgGCGCcgcgcagcaGGAc -3' miRNA: 3'- -CGCGuc-AGCCGcGACCGGC---UGCG---------CCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 91703 | 0.66 | 0.606319 |
Target: 5'- uGCGaCAGcCGGCuGCaaGGCCGGCucgccgcgGCGGGc -3' miRNA: 3'- -CGC-GUCaGCCG-CGa-CCGGCUG--------CGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 120942 | 0.66 | 0.586795 |
Target: 5'- gGCGCGGgaaGGUGgaGGCuCGcgcccCGCGGGg -3' miRNA: 3'- -CGCGUCag-CCGCgaCCG-GCu----GCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 115536 | 0.66 | 0.589717 |
Target: 5'- aGCGCAGcaUCGGCgGCUGGugcagguCCGuguggcagcacacgaACGCGGc -3' miRNA: 3'- -CGCGUC--AGCCG-CGACC-------GGC---------------UGCGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 92222 | 0.66 | 0.625913 |
Target: 5'- gGCGUcGUCGGC-CccGCCGagcGCGCGGAu -3' miRNA: 3'- -CGCGuCAGCCGcGacCGGC---UGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 119625 | 0.66 | 0.596545 |
Target: 5'- cGUGCAcugCGGCG-UGGCCGACaacgccaccgGCGGc -3' miRNA: 3'- -CGCGUca-GCCGCgACCGGCUG----------CGCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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