miRNA display CGI


Results 41 - 60 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23798 3' -62.5 NC_005261.1 + 116697 0.66 0.586795
Target:  5'- aGCGCcucgcucaUCGGCcgccaGCUGGCCGACGUc-- -3'
miRNA:   3'- -CGCGuc------AGCCG-----CGACCGGCUGCGccu -5'
23798 3' -62.5 NC_005261.1 + 107949 0.66 0.61611
Target:  5'- aCGUAGUcCGuGCGCggccgcggGGCCaugcaGugGCGGAu -3'
miRNA:   3'- cGCGUCA-GC-CGCGa-------CCGG-----CugCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 61030 0.66 0.63572
Target:  5'- gGgGCGGcaccgCGGCaGCUGGCUGGUGCuGGGc -3'
miRNA:   3'- -CgCGUCa----GCCG-CGACCGGCUGCG-CCU- -5'
23798 3' -62.5 NC_005261.1 + 68560 0.66 0.63572
Target:  5'- uGCGCGGgcucuUUGaGCGCgucgccGCCGAgGCGGGc -3'
miRNA:   3'- -CGCGUC-----AGC-CGCGac----CGGCUgCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 50992 0.66 0.606319
Target:  5'- cCGaCGG-CGGCGCgugGGCgCGGCG-GGAg -3'
miRNA:   3'- cGC-GUCaGCCGCGa--CCG-GCUGCgCCU- -5'
23798 3' -62.5 NC_005261.1 + 2744 0.66 0.596545
Target:  5'- uGCGCcG-CGGCG--GGCCGuCGCGGc -3'
miRNA:   3'- -CGCGuCaGCCGCgaCCGGCuGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 138186 0.66 0.606319
Target:  5'- gGgGgGGagGGCGCgGGCgGGCGgGGGg -3'
miRNA:   3'- -CgCgUCagCCGCGaCCGgCUGCgCCU- -5'
23798 3' -62.5 NC_005261.1 + 76716 0.66 0.596545
Target:  5'- gGCGUcGUCaacugcccGCaGCUGGCCGAcgugcuCGCGGAc -3'
miRNA:   3'- -CGCGuCAGc-------CG-CGACCGGCU------GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 55455 0.66 0.625913
Target:  5'- gGCGCGGUgGGCcagucgucGCUuaacacguccGGuCCGACGCGcGGc -3'
miRNA:   3'- -CGCGUCAgCCG--------CGA----------CC-GGCUGCGC-CU- -5'
23798 3' -62.5 NC_005261.1 + 123175 0.66 0.625913
Target:  5'- cGCGCGGgcgUGGUgGCUGGUguGgGCGGAc -3'
miRNA:   3'- -CGCGUCa--GCCG-CGACCGgcUgCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 80860 0.66 0.586795
Target:  5'- cGCGCAccccaGGCGCgcucaGCCG-CGCGGGc -3'
miRNA:   3'- -CGCGUcag--CCGCGac---CGGCuGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 117695 0.66 0.606319
Target:  5'- gGCGaGGcCGGCcCUgaGGCCGGCGCGcGGg -3'
miRNA:   3'- -CGCgUCaGCCGcGA--CCGGCUGCGC-CU- -5'
23798 3' -62.5 NC_005261.1 + 102331 0.66 0.596545
Target:  5'- cGCGCAGcCGcGCcaGCUcGGCCGcgucgaAgGCGGAg -3'
miRNA:   3'- -CGCGUCaGC-CG--CGA-CCGGC------UgCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 76779 0.66 0.63572
Target:  5'- gGCGCGGaCGcccccGCGCUGGCgCcGCGCGa- -3'
miRNA:   3'- -CGCGUCaGC-----CGCGACCG-GcUGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 88773 0.66 0.63572
Target:  5'- uGCGCuccUCGGCcCUGGCCGccgGCGCcgcgcagcaGGAc -3'
miRNA:   3'- -CGCGuc-AGCCGcGACCGGC---UGCG---------CCU- -5'
23798 3' -62.5 NC_005261.1 + 91703 0.66 0.606319
Target:  5'- uGCGaCAGcCGGCuGCaaGGCCGGCucgccgcgGCGGGc -3'
miRNA:   3'- -CGC-GUCaGCCG-CGa-CCGGCUG--------CGCCU- -5'
23798 3' -62.5 NC_005261.1 + 120942 0.66 0.586795
Target:  5'- gGCGCGGgaaGGUGgaGGCuCGcgcccCGCGGGg -3'
miRNA:   3'- -CGCGUCag-CCGCgaCCG-GCu----GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 115536 0.66 0.589717
Target:  5'- aGCGCAGcaUCGGCgGCUGGugcagguCCGuguggcagcacacgaACGCGGc -3'
miRNA:   3'- -CGCGUC--AGCCG-CGACC-------GGC---------------UGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 92222 0.66 0.625913
Target:  5'- gGCGUcGUCGGC-CccGCCGagcGCGCGGAu -3'
miRNA:   3'- -CGCGuCAGCCGcGacCGGC---UGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 119625 0.66 0.596545
Target:  5'- cGUGCAcugCGGCG-UGGCCGACaacgccaccgGCGGc -3'
miRNA:   3'- -CGCGUca-GCCGCgACCGGCUG----------CGCCu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.