Results 61 - 80 of 320 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23798 | 3' | -62.5 | NC_005261.1 | + | 12069 | 0.66 | 0.586795 |
Target: 5'- gGUGCGGcagCGGCGUccGcGCCGGgGCGGc -3' miRNA: 3'- -CGCGUCa--GCCGCGa-C-CGGCUgCGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 81760 | 0.66 | 0.586795 |
Target: 5'- cGCGaAGaCGGCGCgGGCCaggacgagcuCGCGGAu -3' miRNA: 3'- -CGCgUCaGCCGCGaCCGGcu--------GCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 80860 | 0.66 | 0.586795 |
Target: 5'- cGCGCAccccaGGCGCgcucaGCCG-CGCGGGc -3' miRNA: 3'- -CGCGUcag--CCGCGac---CGGCuGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 94847 | 0.66 | 0.585822 |
Target: 5'- cGCGCcuGGccUCGGCGCUcgcgcacGGCCcGgGCGGGc -3' miRNA: 3'- -CGCG--UC--AGCCGCGA-------CCGGcUgCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 57780 | 0.67 | 0.577076 |
Target: 5'- -aGCAGUccgCGGCGUcgcgcGGCgGGCGCGcGAa -3' miRNA: 3'- cgCGUCA---GCCGCGa----CCGgCUGCGC-CU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 73798 | 0.67 | 0.577076 |
Target: 5'- cGCgGCGGUCGGCGCgcagaaGCCG-CGCc-- -3' miRNA: 3'- -CG-CGUCAGCCGCGac----CGGCuGCGccu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 43145 | 0.67 | 0.577076 |
Target: 5'- cGCGCGGcCuGCGCgccGCCGAcauCGCGGc -3' miRNA: 3'- -CGCGUCaGcCGCGac-CGGCU---GCGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 28618 | 0.67 | 0.577076 |
Target: 5'- gGCGgAGcugUGGCGCaUGGUgGcCGCGGGg -3' miRNA: 3'- -CGCgUCa--GCCGCG-ACCGgCuGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 15380 | 0.67 | 0.577076 |
Target: 5'- gGCGCccUCGGCGCcGccgucgauGCCGACGCGc- -3' miRNA: 3'- -CGCGucAGCCGCGaC--------CGGCUGCGCcu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 95625 | 0.67 | 0.577076 |
Target: 5'- cGCGCGGUCcaGGagcgGCUGGgCGAgCGCGa- -3' miRNA: 3'- -CGCGUCAG--CCg---CGACCgGCU-GCGCcu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 72466 | 0.67 | 0.577076 |
Target: 5'- aGCGCGG-CGaGCGCgagcgcGGCCaGCGCcaGGAg -3' miRNA: 3'- -CGCGUCaGC-CGCGa-----CCGGcUGCG--CCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 103491 | 0.67 | 0.576105 |
Target: 5'- gGCGCAagacgucGUCGGCGCc-GCgGACgGCGGc -3' miRNA: 3'- -CGCGU-------CAGCCGCGacCGgCUG-CGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 29912 | 0.67 | 0.576105 |
Target: 5'- cGCGCgAG-CGGCugcgcgaGCUGGCgGACGCu-- -3' miRNA: 3'- -CGCG-UCaGCCG-------CGACCGgCUGCGccu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 134973 | 0.67 | 0.574166 |
Target: 5'- aCGCAGaCGGCGaggacggGGCCGccggggcgccccugGCGCGGc -3' miRNA: 3'- cGCGUCaGCCGCga-----CCGGC--------------UGCGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 18704 | 0.67 | 0.573197 |
Target: 5'- gGCGCAcGUCGGCGaagcagagaucGUCgGGCGCGGGg -3' miRNA: 3'- -CGCGU-CAGCCGCgac--------CGG-CUGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 1719 | 0.67 | 0.571261 |
Target: 5'- cGCGCGGcggcacgggcaccgCGGUGCgcgGGCCcaGGCGCGuGGc -3' miRNA: 3'- -CGCGUCa-------------GCCGCGa--CCGG--CUGCGC-CU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 97407 | 0.67 | 0.567392 |
Target: 5'- cCGCGGgcuuggCgGGCGCgccgGGCCugcccuugGGCGCGGGu -3' miRNA: 3'- cGCGUCa-----G-CCGCGa---CCGG--------CUGCGCCU- -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 121066 | 0.67 | 0.567392 |
Target: 5'- cGCGCGGUgugcgCGGCGCcggcGGCCGccaGCGCc-- -3' miRNA: 3'- -CGCGUCA-----GCCGCGa---CCGGC---UGCGccu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 97745 | 0.67 | 0.567392 |
Target: 5'- -gGCAGgggCGGgGCgGGCucggCGGCGCGGc -3' miRNA: 3'- cgCGUCa--GCCgCGaCCG----GCUGCGCCu -5' |
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23798 | 3' | -62.5 | NC_005261.1 | + | 82161 | 0.67 | 0.567392 |
Target: 5'- cGCGcCAGcaagcgCGGCGC-GGaaGGCGCGGc -3' miRNA: 3'- -CGC-GUCa-----GCCGCGaCCggCUGCGCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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