miRNA display CGI


Results 61 - 80 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23798 3' -62.5 NC_005261.1 + 12069 0.66 0.586795
Target:  5'- gGUGCGGcagCGGCGUccGcGCCGGgGCGGc -3'
miRNA:   3'- -CGCGUCa--GCCGCGa-C-CGGCUgCGCCu -5'
23798 3' -62.5 NC_005261.1 + 81760 0.66 0.586795
Target:  5'- cGCGaAGaCGGCGCgGGCCaggacgagcuCGCGGAu -3'
miRNA:   3'- -CGCgUCaGCCGCGaCCGGcu--------GCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 80860 0.66 0.586795
Target:  5'- cGCGCAccccaGGCGCgcucaGCCG-CGCGGGc -3'
miRNA:   3'- -CGCGUcag--CCGCGac---CGGCuGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 94847 0.66 0.585822
Target:  5'- cGCGCcuGGccUCGGCGCUcgcgcacGGCCcGgGCGGGc -3'
miRNA:   3'- -CGCG--UC--AGCCGCGA-------CCGGcUgCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 57780 0.67 0.577076
Target:  5'- -aGCAGUccgCGGCGUcgcgcGGCgGGCGCGcGAa -3'
miRNA:   3'- cgCGUCA---GCCGCGa----CCGgCUGCGC-CU- -5'
23798 3' -62.5 NC_005261.1 + 73798 0.67 0.577076
Target:  5'- cGCgGCGGUCGGCGCgcagaaGCCG-CGCc-- -3'
miRNA:   3'- -CG-CGUCAGCCGCGac----CGGCuGCGccu -5'
23798 3' -62.5 NC_005261.1 + 43145 0.67 0.577076
Target:  5'- cGCGCGGcCuGCGCgccGCCGAcauCGCGGc -3'
miRNA:   3'- -CGCGUCaGcCGCGac-CGGCU---GCGCCu -5'
23798 3' -62.5 NC_005261.1 + 28618 0.67 0.577076
Target:  5'- gGCGgAGcugUGGCGCaUGGUgGcCGCGGGg -3'
miRNA:   3'- -CGCgUCa--GCCGCG-ACCGgCuGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 15380 0.67 0.577076
Target:  5'- gGCGCccUCGGCGCcGccgucgauGCCGACGCGc- -3'
miRNA:   3'- -CGCGucAGCCGCGaC--------CGGCUGCGCcu -5'
23798 3' -62.5 NC_005261.1 + 95625 0.67 0.577076
Target:  5'- cGCGCGGUCcaGGagcgGCUGGgCGAgCGCGa- -3'
miRNA:   3'- -CGCGUCAG--CCg---CGACCgGCU-GCGCcu -5'
23798 3' -62.5 NC_005261.1 + 72466 0.67 0.577076
Target:  5'- aGCGCGG-CGaGCGCgagcgcGGCCaGCGCcaGGAg -3'
miRNA:   3'- -CGCGUCaGC-CGCGa-----CCGGcUGCG--CCU- -5'
23798 3' -62.5 NC_005261.1 + 103491 0.67 0.576105
Target:  5'- gGCGCAagacgucGUCGGCGCc-GCgGACgGCGGc -3'
miRNA:   3'- -CGCGU-------CAGCCGCGacCGgCUG-CGCCu -5'
23798 3' -62.5 NC_005261.1 + 29912 0.67 0.576105
Target:  5'- cGCGCgAG-CGGCugcgcgaGCUGGCgGACGCu-- -3'
miRNA:   3'- -CGCG-UCaGCCG-------CGACCGgCUGCGccu -5'
23798 3' -62.5 NC_005261.1 + 134973 0.67 0.574166
Target:  5'- aCGCAGaCGGCGaggacggGGCCGccggggcgccccugGCGCGGc -3'
miRNA:   3'- cGCGUCaGCCGCga-----CCGGC--------------UGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 18704 0.67 0.573197
Target:  5'- gGCGCAcGUCGGCGaagcagagaucGUCgGGCGCGGGg -3'
miRNA:   3'- -CGCGU-CAGCCGCgac--------CGG-CUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 1719 0.67 0.571261
Target:  5'- cGCGCGGcggcacgggcaccgCGGUGCgcgGGCCcaGGCGCGuGGc -3'
miRNA:   3'- -CGCGUCa-------------GCCGCGa--CCGG--CUGCGC-CU- -5'
23798 3' -62.5 NC_005261.1 + 97407 0.67 0.567392
Target:  5'- cCGCGGgcuuggCgGGCGCgccgGGCCugcccuugGGCGCGGGu -3'
miRNA:   3'- cGCGUCa-----G-CCGCGa---CCGG--------CUGCGCCU- -5'
23798 3' -62.5 NC_005261.1 + 121066 0.67 0.567392
Target:  5'- cGCGCGGUgugcgCGGCGCcggcGGCCGccaGCGCc-- -3'
miRNA:   3'- -CGCGUCA-----GCCGCGa---CCGGC---UGCGccu -5'
23798 3' -62.5 NC_005261.1 + 97745 0.67 0.567392
Target:  5'- -gGCAGgggCGGgGCgGGCucggCGGCGCGGc -3'
miRNA:   3'- cgCGUCa--GCCgCGaCCG----GCUGCGCCu -5'
23798 3' -62.5 NC_005261.1 + 82161 0.67 0.567392
Target:  5'- cGCGcCAGcaagcgCGGCGC-GGaaGGCGCGGc -3'
miRNA:   3'- -CGC-GUCa-----GCCGCGaCCggCUGCGCCu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.