miRNA display CGI


Results 1 - 20 of 157 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23798 5' -55.3 NC_005261.1 + 105957 0.66 0.935823
Target:  5'- cGUCGAUGGccuCGGCGccCAgcGCGGCGu- -3'
miRNA:   3'- aCAGCUGCCu--GCUGCu-GU--UGCCGCua -5'
23798 5' -55.3 NC_005261.1 + 59776 0.66 0.935823
Target:  5'- gUGcUCGGCcgcaGCGACGGCGGCgGGCGGc -3'
miRNA:   3'- -AC-AGCUGcc--UGCUGCUGUUG-CCGCUa -5'
23798 5' -55.3 NC_005261.1 + 16081 0.66 0.935823
Target:  5'- gUGUaGACGaaguacGCGGCGGCAccgGCGGCGGc -3'
miRNA:   3'- -ACAgCUGCc-----UGCUGCUGU---UGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 132583 0.66 0.935823
Target:  5'- cGUCGgcgcgcccGCGGACGccCGGCc-CGGCGAg -3'
miRNA:   3'- aCAGC--------UGCCUGCu-GCUGuuGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 2594 0.66 0.935823
Target:  5'- cG-CGGCGGAagcCGcCGuCGGCGGCGGg -3'
miRNA:   3'- aCaGCUGCCU---GCuGCuGUUGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 23526 0.66 0.935823
Target:  5'- cG-CGGuCGGGCGAgCGGCAGaGGCGGc -3'
miRNA:   3'- aCaGCU-GCCUGCU-GCUGUUgCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 62295 0.66 0.93533
Target:  5'- cGUCGgcgccgcGCGGGCGcGCGGCGGCcccGCGGUc -3'
miRNA:   3'- aCAGC-------UGCCUGC-UGCUGUUGc--CGCUA- -5'
23798 5' -55.3 NC_005261.1 + 56246 0.66 0.930789
Target:  5'- gGUCGuccCGGGCGugGGCAcgcugcacggguACuGCGAg -3'
miRNA:   3'- aCAGCu--GCCUGCugCUGU------------UGcCGCUa -5'
23798 5' -55.3 NC_005261.1 + 43771 0.66 0.930789
Target:  5'- gUGcUCGugGGGCGGCGcGCGGagGGCGc- -3'
miRNA:   3'- -AC-AGCugCCUGCUGC-UGUUg-CCGCua -5'
23798 5' -55.3 NC_005261.1 + 20967 0.66 0.930789
Target:  5'- gGUCG-UGGACcGCGGC-GCGGCGc- -3'
miRNA:   3'- aCAGCuGCCUGcUGCUGuUGCCGCua -5'
23798 5' -55.3 NC_005261.1 + 35053 0.66 0.930789
Target:  5'- --aCGGCGGcCG-CG-CGGCGGCGGUc -3'
miRNA:   3'- acaGCUGCCuGCuGCuGUUGCCGCUA- -5'
23798 5' -55.3 NC_005261.1 + 91093 0.66 0.928708
Target:  5'- gGUCGACGuGcucaugcACGACGACGccgucucgcgcgccGCGGcCGAg -3'
miRNA:   3'- aCAGCUGC-C-------UGCUGCUGU--------------UGCC-GCUa -5'
23798 5' -55.3 NC_005261.1 + 88813 0.66 0.925515
Target:  5'- cGcCGGCGG-CGG-GGCGGCGGCGc- -3'
miRNA:   3'- aCaGCUGCCuGCUgCUGUUGCCGCua -5'
23798 5' -55.3 NC_005261.1 + 98917 0.66 0.925515
Target:  5'- gGUCGGCGGG-GuCGGCuGCGGgGGg -3'
miRNA:   3'- aCAGCUGCCUgCuGCUGuUGCCgCUa -5'
23798 5' -55.3 NC_005261.1 + 52004 0.66 0.925515
Target:  5'- -uUCGA-GGACGACGACGAggaGGCc-- -3'
miRNA:   3'- acAGCUgCCUGCUGCUGUUg--CCGcua -5'
23798 5' -55.3 NC_005261.1 + 98052 0.66 0.925515
Target:  5'- gGcCG-CGGGCGGCGGgAccgcggGCGGCGGg -3'
miRNA:   3'- aCaGCuGCCUGCUGCUgU------UGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 39374 0.66 0.920002
Target:  5'- -aUCGGCggccggGGAgGGCGGCccuGGCGGCGAc -3'
miRNA:   3'- acAGCUG------CCUgCUGCUG---UUGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 75571 0.66 0.920002
Target:  5'- cGgggCGcUGGGCGGCGGC-GCGGCGc- -3'
miRNA:   3'- aCa--GCuGCCUGCUGCUGuUGCCGCua -5'
23798 5' -55.3 NC_005261.1 + 20660 0.66 0.920002
Target:  5'- --cCGcCGGugG-CGGCAGCGGCaGAg -3'
miRNA:   3'- acaGCuGCCugCuGCUGUUGCCG-CUa -5'
23798 5' -55.3 NC_005261.1 + 136956 0.66 0.920002
Target:  5'- cGUCGuCGGGCaagaGACGAaGACGGCc-- -3'
miRNA:   3'- aCAGCuGCCUG----CUGCUgUUGCCGcua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.