miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23798 5' -55.3 NC_005261.1 + 60041 0.83 0.176539
Target:  5'- cGUCGGCGc-CGACGGCGGCGGCGAa -3'
miRNA:   3'- aCAGCUGCcuGCUGCUGUUGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 375 0.8 0.243534
Target:  5'- gUGgCGGCGGugGCGGCGGCGGCGGCGGc -3'
miRNA:   3'- -ACaGCUGCC--UGCUGCUGUUGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 138046 0.8 0.243534
Target:  5'- gUGgCGGCGGugGCGGCGGCGGCGGCGGc -3'
miRNA:   3'- -ACaGCUGCC--UGCUGCUGUUGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 93670 0.8 0.24948
Target:  5'- gGUCcGCGGGCGGCGGCGcCGGCGGg -3'
miRNA:   3'- aCAGcUGCCUGCUGCUGUuGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 74874 0.78 0.345595
Target:  5'- ---aGGCGGACGcgGCGGCGGCGGCGGa -3'
miRNA:   3'- acagCUGCCUGC--UGCUGUUGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 1041 0.77 0.353394
Target:  5'- aGggCGGCGGGCGGCGGCGuuaGCGGCGc- -3'
miRNA:   3'- aCa-GCUGCCUGCUGCUGU---UGCCGCua -5'
23798 5' -55.3 NC_005261.1 + 13089 0.77 0.375067
Target:  5'- cGUCGGCGGGCGGCGggcucggcucggggGCGuCGGCGGc -3'
miRNA:   3'- aCAGCUGCCUGCUGC--------------UGUuGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 107537 0.77 0.394225
Target:  5'- cGUCGGCGGccaccagcACGuccgagagcACGGCAGCGGCGAa -3'
miRNA:   3'- aCAGCUGCC--------UGC---------UGCUGUUGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 132001 0.76 0.411391
Target:  5'- aGUCG-CGGACGGCGACAACugGGCc-- -3'
miRNA:   3'- aCAGCuGCCUGCUGCUGUUG--CCGcua -5'
23798 5' -55.3 NC_005261.1 + 103503 0.76 0.411391
Target:  5'- cGUCGgcgccGCGGACGGCGGCGuccGCGGCa-- -3'
miRNA:   3'- aCAGC-----UGCCUGCUGCUGU---UGCCGcua -5'
23798 5' -55.3 NC_005261.1 + 76443 0.76 0.420146
Target:  5'- --aUGGCGGAcgcgccCGACGGCGACGGCGGc -3'
miRNA:   3'- acaGCUGCCU------GCUGCUGUUGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 105272 0.76 0.429012
Target:  5'- -cUCGGCGGGCGGCaGCGcCGGCGAg -3'
miRNA:   3'- acAGCUGCCUGCUGcUGUuGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 127626 0.76 0.429012
Target:  5'- gGcCGGcCGGACG-CGACGGCGGCGGc -3'
miRNA:   3'- aCaGCU-GCCUGCuGCUGUUGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 134949 0.75 0.447071
Target:  5'- aGcCGAUGGGCGAgGGCGcCGGCGAc -3'
miRNA:   3'- aCaGCUGCCUGCUgCUGUuGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 129651 0.75 0.465544
Target:  5'- gUGgCGGCGG-CGGCGGCAGgGGCGGg -3'
miRNA:   3'- -ACaGCUGCCuGCUGCUGUUgCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 56150 0.74 0.503627
Target:  5'- gGcCGAgGGugG-CGGCAGCGGCGGg -3'
miRNA:   3'- aCaGCUgCCugCuGCUGUUGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 61024 0.74 0.52317
Target:  5'- cGUCGugGGGCGgcaccGCGGCAGCuGGCuGGUg -3'
miRNA:   3'- aCAGCugCCUGC-----UGCUGUUG-CCG-CUA- -5'
23798 5' -55.3 NC_005261.1 + 87416 0.74 0.542998
Target:  5'- cGUCGACGGGCGcgcCGGCGAaGGCGc- -3'
miRNA:   3'- aCAGCUGCCUGCu--GCUGUUgCCGCua -5'
23798 5' -55.3 NC_005261.1 + 117603 0.73 0.553006
Target:  5'- cUGcCGACGauGACGACGACGACGgaaGCGAc -3'
miRNA:   3'- -ACaGCUGC--CUGCUGCUGUUGC---CGCUa -5'
23798 5' -55.3 NC_005261.1 + 93724 0.73 0.563068
Target:  5'- cGUCGuCGG-CGGCGGCAGCGcGCGc- -3'
miRNA:   3'- aCAGCuGCCuGCUGCUGUUGC-CGCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.