miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23798 5' -55.3 NC_005261.1 + 258 0.73 0.573178
Target:  5'- cGgCGGCGGcuGCGGCGGCGgcuGCGGCGGc -3'
miRNA:   3'- aCaGCUGCC--UGCUGCUGU---UGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 294 0.73 0.573178
Target:  5'- cGgCGGCGGcuGCGGCGGCGgcuGCGGCGGc -3'
miRNA:   3'- aCaGCUGCC--UGCUGCUGU---UGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 322 0.68 0.852091
Target:  5'- nG-CGGCuGcGGCGGCGGCuGCGGCGGc -3'
miRNA:   3'- aCaGCUG-C-CUGCUGCUGuUGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 375 0.8 0.243534
Target:  5'- gUGgCGGCGGugGCGGCGGCGGCGGCGGc -3'
miRNA:   3'- -ACaGCUGCC--UGCUGCUGUUGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 545 0.69 0.801456
Target:  5'- ---gGGCGGACGGCGGCucggccgccgcGCGGUGAc -3'
miRNA:   3'- acagCUGCCUGCUGCUGu----------UGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 1041 0.77 0.353394
Target:  5'- aGggCGGCGGGCGGCGGCGuuaGCGGCGc- -3'
miRNA:   3'- aCa-GCUGCCUGCUGCUGU---UGCCGCua -5'
23798 5' -55.3 NC_005261.1 + 1104 0.67 0.865196
Target:  5'- cGUCGuccgaggacGCGGACGACGAgGaggacgcggaggacGCGGaCGAg -3'
miRNA:   3'- aCAGC---------UGCCUGCUGCUgU--------------UGCC-GCUa -5'
23798 5' -55.3 NC_005261.1 + 1411 0.7 0.745304
Target:  5'- cG-CGGCGG-CGGCGGgGGCGGCGc- -3'
miRNA:   3'- aCaGCUGCCuGCUGCUgUUGCCGCua -5'
23798 5' -55.3 NC_005261.1 + 2594 0.66 0.935823
Target:  5'- cG-CGGCGGAagcCGcCGuCGGCGGCGGg -3'
miRNA:   3'- aCaGCUGCCU---GCuGCuGUUGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 3830 0.67 0.888871
Target:  5'- cG-CGGgccCGGGCGcugGCGGCAGCGGCGc- -3'
miRNA:   3'- aCaGCU---GCCUGC---UGCUGUUGCCGCua -5'
23798 5' -55.3 NC_005261.1 + 4395 0.68 0.84411
Target:  5'- cG-CGGcCGGGCGGCGGCGGCGcGCu-- -3'
miRNA:   3'- aCaGCU-GCCUGCUGCUGUUGC-CGcua -5'
23798 5' -55.3 NC_005261.1 + 4513 0.68 0.827576
Target:  5'- aGUCGcgcgcccgcGCGGGCGccGCGGCGAgGGCGc- -3'
miRNA:   3'- aCAGC---------UGCCUGC--UGCUGUUgCCGCua -5'
23798 5' -55.3 NC_005261.1 + 4661 0.72 0.654978
Target:  5'- gUGUCGGCc-GCGGCGGCGGCGGCc-- -3'
miRNA:   3'- -ACAGCUGccUGCUGCUGUUGCCGcua -5'
23798 5' -55.3 NC_005261.1 + 6074 0.7 0.735543
Target:  5'- cGUccCGACGG-CGGCGGCAagcaACGGUGGc -3'
miRNA:   3'- aCA--GCUGCCuGCUGCUGU----UGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 10892 0.68 0.859872
Target:  5'- --cCGGCGccaACGGCGGCGGCGGCa-- -3'
miRNA:   3'- acaGCUGCc--UGCUGCUGUUGCCGcua -5'
23798 5' -55.3 NC_005261.1 + 11429 0.71 0.695689
Target:  5'- ---aGGCGGGCGGgGGgGGCGGCGGa -3'
miRNA:   3'- acagCUGCCUGCUgCUgUUGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 11924 0.69 0.819037
Target:  5'- gGcCGGCGGcuGCGGCGGCccgcgccGCGGCGGc -3'
miRNA:   3'- aCaGCUGCC--UGCUGCUGu------UGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 12060 0.67 0.874807
Target:  5'- cGUacCGGCGGu--GCGGCAGCGGCGu- -3'
miRNA:   3'- aCA--GCUGCCugcUGCUGUUGCCGCua -5'
23798 5' -55.3 NC_005261.1 + 13089 0.77 0.375067
Target:  5'- cGUCGGCGGGCGGCGggcucggcucggggGCGuCGGCGGc -3'
miRNA:   3'- aCAGCUGCCUGCUGC--------------UGUuGCCGCUa -5'
23798 5' -55.3 NC_005261.1 + 14105 0.68 0.852091
Target:  5'- cGUCGAggcagaCGGGCGuCGGCucggGCGGUGGg -3'
miRNA:   3'- aCAGCU------GCCUGCuGCUGu---UGCCGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.