miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23799 3' -56 NC_005261.1 + 78411 0.66 0.881951
Target:  5'- cCGUGCucUGUGGgcgAUGGGggGGGCGa -3'
miRNA:   3'- aGCACG--ACACCag-UACUCagCCCGCg -5'
23799 3' -56 NC_005261.1 + 14181 0.66 0.881951
Target:  5'- cUCGggGCgcgGGUCAggcccaggGAGgaagaCGGGCGCa -3'
miRNA:   3'- -AGCa-CGacaCCAGUa-------CUCa----GCCCGCG- -5'
23799 3' -56 NC_005261.1 + 78615 0.67 0.852092
Target:  5'- cUCG-GCUGUGGUCG------GGGCGCc -3'
miRNA:   3'- -AGCaCGACACCAGUacucagCCCGCG- -5'
23799 3' -56 NC_005261.1 + 63711 0.67 0.852092
Target:  5'- gCGUGUUGcccaGGUcCGUGAG-CGGcGUGCg -3'
miRNA:   3'- aGCACGACa---CCA-GUACUCaGCC-CGCG- -5'
23799 3' -56 NC_005261.1 + 43757 0.67 0.844111
Target:  5'- cCGUGCcccugaagGUGcUCGUGGGgCGGcGCGCg -3'
miRNA:   3'- aGCACGa-------CACcAGUACUCaGCC-CGCG- -5'
23799 3' -56 NC_005261.1 + 34491 0.67 0.844111
Target:  5'- -gGUGCUGga---GUGGGUCgaGGGCGCu -3'
miRNA:   3'- agCACGACaccagUACUCAG--CCCGCG- -5'
23799 3' -56 NC_005261.1 + 121108 0.69 0.760711
Target:  5'- cCGUGCg--GGUCcucuagggcgcgGAGgcgCGGGCGCg -3'
miRNA:   3'- aGCACGacaCCAGua----------CUCa--GCCCGCG- -5'
23799 3' -56 NC_005261.1 + 134892 0.69 0.745304
Target:  5'- cUGUGCguucgGUGGUg--GAG-CGGGUGCg -3'
miRNA:   3'- aGCACGa----CACCAguaCUCaGCCCGCG- -5'
23799 3' -56 NC_005261.1 + 83299 0.7 0.685569
Target:  5'- aCG-GCUGcgcggGGUCGUGcAGcUCGGGCGg -3'
miRNA:   3'- aGCaCGACa----CCAGUAC-UC-AGCCCGCg -5'
23799 3' -56 NC_005261.1 + 43627 0.71 0.634479
Target:  5'- uUCGUGCUGUGGgcgccCGUGuGgCGcGGCGg -3'
miRNA:   3'- -AGCACGACACCa----GUACuCaGC-CCGCg -5'
23799 3' -56 NC_005261.1 + 97244 0.73 0.553006
Target:  5'- cCGgccgGCUG-GGUCGcgGGGUCGGGUGg -3'
miRNA:   3'- aGCa---CGACaCCAGUa-CUCAGCCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.