Results 61 - 80 of 108 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23799 | 5' | -60 | NC_005261.1 | + | 33807 | 0.68 | 0.555662 |
Target: 5'- cGGCGGGCuuGuCUUUGGGCggcCGGgGGg -3' miRNA: 3'- uUCGCCCGggC-GAAGCUCGa--GCUgUC- -5' |
|||||||
23799 | 5' | -60 | NC_005261.1 | + | 20873 | 0.68 | 0.555662 |
Target: 5'- -cGCGGGCCgGCcaUCGccAGCUCGugGc -3' miRNA: 3'- uuCGCCCGGgCGa-AGC--UCGAGCugUc -5' |
|||||||
23799 | 5' | -60 | NC_005261.1 | + | 23160 | 0.68 | 0.584653 |
Target: 5'- aGAGUGGGCCCggcaggcGCgcCGGGggCGACAGc -3' miRNA: 3'- -UUCGCCCGGG-------CGaaGCUCgaGCUGUC- -5' |
|||||||
23799 | 5' | -60 | NC_005261.1 | + | 33479 | 0.68 | 0.585659 |
Target: 5'- cAGcCGGGCCCGCUcgcggggcccgCGAGCaccaggggCGGCGGc -3' miRNA: 3'- uUC-GCCCGGGCGAa----------GCUCGa-------GCUGUC- -5' |
|||||||
23799 | 5' | -60 | NC_005261.1 | + | 22776 | 0.68 | 0.5917 |
Target: 5'- gGGGCGGGcCCCGCgagaaggggguugUCGcGGC-CGGCGGc -3' miRNA: 3'- -UUCGCCC-GGGCGa------------AGC-UCGaGCUGUC- -5' |
|||||||
23799 | 5' | -60 | NC_005261.1 | + | 5161 | 0.68 | 0.585659 |
Target: 5'- cGGCGGG-CCGCgUCGAGCagGGcCGGg -3' miRNA: 3'- uUCGCCCgGGCGaAGCUCGagCU-GUC- -5' |
|||||||
23799 | 5' | -60 | NC_005261.1 | + | 104807 | 0.68 | 0.585659 |
Target: 5'- cAGCGGGuCCCGCUcCGcAGCggCGucGCGGg -3' miRNA: 3'- uUCGCCC-GGGCGAaGC-UCGa-GC--UGUC- -5' |
|||||||
23799 | 5' | -60 | NC_005261.1 | + | 98208 | 0.69 | 0.516412 |
Target: 5'- cAGCGGGCgCCGCcaCGgcAGCgCGGCGGg -3' miRNA: 3'- uUCGCCCG-GGCGaaGC--UCGaGCUGUC- -5' |
|||||||
23799 | 5' | -60 | NC_005261.1 | + | 84132 | 0.69 | 0.497204 |
Target: 5'- cGGGCGGGgUCGCUggCGGGcCUCGGCc- -3' miRNA: 3'- -UUCGCCCgGGCGAa-GCUC-GAGCUGuc -5' |
|||||||
23799 | 5' | -60 | NC_005261.1 | + | 4526 | 0.69 | 0.516412 |
Target: 5'- -cGCGGGCgCCGCggCGAGggCGcCGGg -3' miRNA: 3'- uuCGCCCG-GGCGaaGCUCgaGCuGUC- -5' |
|||||||
23799 | 5' | -60 | NC_005261.1 | + | 128802 | 0.69 | 0.526128 |
Target: 5'- --cCGGGCCCGCggCGGGgCUCGcgcuGCGGc -3' miRNA: 3'- uucGCCCGGGCGaaGCUC-GAGC----UGUC- -5' |
|||||||
23799 | 5' | -60 | NC_005261.1 | + | 121394 | 0.69 | 0.516412 |
Target: 5'- cGGCGGcGCCUGCc-CGAGUgCGACGGc -3' miRNA: 3'- uUCGCC-CGGGCGaaGCUCGaGCUGUC- -5' |
|||||||
23799 | 5' | -60 | NC_005261.1 | + | 67060 | 0.69 | 0.526128 |
Target: 5'- uAGGCGGGCgCGCgcggGGGCUCGcuCGGg -3' miRNA: 3'- -UUCGCCCGgGCGaag-CUCGAGCu-GUC- -5' |
|||||||
23799 | 5' | -60 | NC_005261.1 | + | 125749 | 0.69 | 0.526128 |
Target: 5'- gGGGCcgGGGCCaggGCUgccgCGGGCUCGGCu- -3' miRNA: 3'- -UUCG--CCCGGg--CGAa---GCUCGAGCUGuc -5' |
|||||||
23799 | 5' | -60 | NC_005261.1 | + | 32748 | 0.69 | 0.526128 |
Target: 5'- -cGCGcGGCCCGCcgcucuaCGGGCUCGGaGGg -3' miRNA: 3'- uuCGC-CCGGGCGaa-----GCUCGAGCUgUC- -5' |
|||||||
23799 | 5' | -60 | NC_005261.1 | + | 17553 | 0.7 | 0.432757 |
Target: 5'- -cGCGGGCCCGCc----GUUCGGCGGu -3' miRNA: 3'- uuCGCCCGGGCGaagcuCGAGCUGUC- -5' |
|||||||
23799 | 5' | -60 | NC_005261.1 | + | 123420 | 0.7 | 0.432757 |
Target: 5'- gGGGCGGGCUCGCcaCGGGC-CG-CAGc -3' miRNA: 3'- -UUCGCCCGGGCGaaGCUCGaGCuGUC- -5' |
|||||||
23799 | 5' | -60 | NC_005261.1 | + | 97390 | 0.7 | 0.440775 |
Target: 5'- -cGCGGcuuucgcGCCUGCcgCGGGCUUGGCGGg -3' miRNA: 3'- uuCGCC-------CGGGCGaaGCUCGAGCUGUC- -5' |
|||||||
23799 | 5' | -60 | NC_005261.1 | + | 52678 | 0.7 | 0.459803 |
Target: 5'- cGAGCGGGCCCuGCUcgCGGGCgCGcCGc -3' miRNA: 3'- -UUCGCCCGGG-CGAa-GCUCGaGCuGUc -5' |
|||||||
23799 | 5' | -60 | NC_005261.1 | + | 104124 | 0.7 | 0.459803 |
Target: 5'- -cGCGcGGUUCGCcgCGAGCUCGGCc- -3' miRNA: 3'- uuCGC-CCGGGCGaaGCUCGAGCUGuc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home