miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23799 5' -60 NC_005261.1 + 84132 0.69 0.497204
Target:  5'- cGGGCGGGgUCGCUggCGGGcCUCGGCc- -3'
miRNA:   3'- -UUCGCCCgGGCGAa-GCUC-GAGCUGuc -5'
23799 5' -60 NC_005261.1 + 23160 0.68 0.584653
Target:  5'- aGAGUGGGCCCggcaggcGCgcCGGGggCGACAGc -3'
miRNA:   3'- -UUCGCCCGGG-------CGaaGCUCgaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 33479 0.68 0.585659
Target:  5'- cAGcCGGGCCCGCUcgcggggcccgCGAGCaccaggggCGGCGGc -3'
miRNA:   3'- uUC-GCCCGGGCGAa----------GCUCGa-------GCUGUC- -5'
23799 5' -60 NC_005261.1 + 104807 0.68 0.585659
Target:  5'- cAGCGGGuCCCGCUcCGcAGCggCGucGCGGg -3'
miRNA:   3'- uUCGCCC-GGGCGAaGC-UCGa-GC--UGUC- -5'
23799 5' -60 NC_005261.1 + 5161 0.68 0.585659
Target:  5'- cGGCGGG-CCGCgUCGAGCagGGcCGGg -3'
miRNA:   3'- uUCGCCCgGGCGaAGCUCGagCU-GUC- -5'
23799 5' -60 NC_005261.1 + 22776 0.68 0.5917
Target:  5'- gGGGCGGGcCCCGCgagaaggggguugUCGcGGC-CGGCGGc -3'
miRNA:   3'- -UUCGCCC-GGGCGa------------AGC-UCGaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 33837 0.68 0.595733
Target:  5'- -cGCGGGCCCccuggcGCUgggCGGGC-CGGgAGg -3'
miRNA:   3'- uuCGCCCGGG------CGAa--GCUCGaGCUgUC- -5'
23799 5' -60 NC_005261.1 + 117682 0.68 0.595733
Target:  5'- cGGcCGGGCCCGCggCGAGgC-CGGCc- -3'
miRNA:   3'- uUC-GCCCGGGCGaaGCUC-GaGCUGuc -5'
23799 5' -60 NC_005261.1 + 83899 0.68 0.595733
Target:  5'- -cGCGGGgCCGC--CGGGCUcgggacCGACGGg -3'
miRNA:   3'- uuCGCCCgGGCGaaGCUCGA------GCUGUC- -5'
23799 5' -60 NC_005261.1 + 4179 0.68 0.565617
Target:  5'- --cCGGGCCCGCgagcUUCGcGCUCuGCAGc -3'
miRNA:   3'- uucGCCCGGGCG----AAGCuCGAGcUGUC- -5'
23799 5' -60 NC_005261.1 + 20873 0.68 0.555662
Target:  5'- -cGCGGGCCgGCcaUCGccAGCUCGugGc -3'
miRNA:   3'- uuCGCCCGGgCGa-AGC--UCGAGCugUc -5'
23799 5' -60 NC_005261.1 + 1424 0.68 0.545758
Target:  5'- gGGGCGGcGCCCGCcUCcAGCaccagCGGCGGc -3'
miRNA:   3'- -UUCGCC-CGGGCGaAGcUCGa----GCUGUC- -5'
23799 5' -60 NC_005261.1 + 44297 0.68 0.545758
Target:  5'- cGGCGGGCcagggCCGCUgcccgCGGGCgccgcaGACGGg -3'
miRNA:   3'- uUCGCCCG-----GGCGAa----GCUCGag----CUGUC- -5'
23799 5' -60 NC_005261.1 + 12781 0.68 0.555662
Target:  5'- cGGgGGGCUCGUcggCGAGCUCGucguCGGc -3'
miRNA:   3'- uUCgCCCGGGCGaa-GCUCGAGCu---GUC- -5'
23799 5' -60 NC_005261.1 + 13099 0.68 0.555662
Target:  5'- cGGCGGGCUCgGCUcggGGGCgUCGGCGGc -3'
miRNA:   3'- uUCGCCCGGG-CGAag-CUCG-AGCUGUC- -5'
23799 5' -60 NC_005261.1 + 33756 0.68 0.555662
Target:  5'- gGGGcCGGGCCCGCUcgCGGGgCccgCGGCGa -3'
miRNA:   3'- -UUC-GCCCGGGCGAa-GCUC-Ga--GCUGUc -5'
23799 5' -60 NC_005261.1 + 33807 0.68 0.555662
Target:  5'- cGGCGGGCuuGuCUUUGGGCggcCGGgGGg -3'
miRNA:   3'- uUCGCCCGggC-GAAGCUCGa--GCUgUC- -5'
23799 5' -60 NC_005261.1 + 56168 0.68 0.555662
Target:  5'- cGGCgGGGCCCGCgggGAGgaCGACGc -3'
miRNA:   3'- uUCG-CCCGGGCGaagCUCgaGCUGUc -5'
23799 5' -60 NC_005261.1 + 2751 0.68 0.555662
Target:  5'- cGGCGGGCCguCGCggCGGGcCUCGAg-- -3'
miRNA:   3'- uUCGCCCGG--GCGaaGCUC-GAGCUguc -5'
23799 5' -60 NC_005261.1 + 111414 0.67 0.605832
Target:  5'- cGGGCGGGCCacaCGCcggCGGGCaagaGACGGa -3'
miRNA:   3'- -UUCGCCCGG---GCGaa-GCUCGag--CUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.