Results 101 - 108 of 108 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 23799 | 5' | -60 | NC_005261.1 | + | 127815 | 0.66 | 0.666573 |
|
Target: 5'- cGGCGGG-CCGC-UCGcGCUCG-CGGc -3' miRNA: 3'- uUCGCCCgGGCGaAGCuCGAGCuGUC- -5' |
|||||||
| 23799 | 5' | -60 | NC_005261.1 | + | 47451 | 0.66 | 0.676648 |
|
Target: 5'- cAGGCGcccGGCCCGCUUgCGcgggGGCUgGGCGa -3' miRNA: 3'- -UUCGC---CCGGGCGAA-GC----UCGAgCUGUc -5' |
|||||||
| 23799 | 5' | -60 | NC_005261.1 | + | 109874 | 0.66 | 0.676648 |
|
Target: 5'- cAGCGGGgCCCGCgggCGGGCgcccCGGg -3' miRNA: 3'- uUCGCCC-GGGCGaa-GCUCGagcuGUC- -5' |
|||||||
| 23799 | 5' | -60 | NC_005261.1 | + | 42215 | 0.66 | 0.676648 |
|
Target: 5'- -cGCGGGCgccCCGCcgCGAGCUCcGCc- -3' miRNA: 3'- uuCGCCCG---GGCGaaGCUCGAGcUGuc -5' |
|||||||
| 23799 | 5' | -60 | NC_005261.1 | + | 53945 | 0.66 | 0.676648 |
|
Target: 5'- -cGCGGcGCgCCGCgcucgCGGGUUCGGguGg -3' miRNA: 3'- uuCGCC-CG-GGCGaa---GCUCGAGCUguC- -5' |
|||||||
| 23799 | 5' | -60 | NC_005261.1 | + | 93943 | 0.66 | 0.676648 |
|
Target: 5'- -cGCGGGCgCCGCcucCGGGCggUCGGCc- -3' miRNA: 3'- uuCGCCCG-GGCGaa-GCUCG--AGCUGuc -5' |
|||||||
| 23799 | 5' | -60 | NC_005261.1 | + | 115423 | 0.66 | 0.676648 |
|
Target: 5'- cAGcCGGGgCCGCggccCGAGCUCGcgcucGCGGc -3' miRNA: 3'- uUC-GCCCgGGCGaa--GCUCGAGC-----UGUC- -5' |
|||||||
| 23799 | 5' | -60 | NC_005261.1 | + | 73775 | 0.66 | 0.716503 |
|
Target: 5'- gAGGCGcuGGCCUGCgaCGuGCgcgCGGCGGu -3' miRNA: 3'- -UUCGC--CCGGGCGaaGCuCGa--GCUGUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home