miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23799 5' -60 NC_005261.1 + 23242 0.66 0.666573
Target:  5'- cAGCGGGCCgGCcugcUCGGGCgagagCuGCAGc -3'
miRNA:   3'- uUCGCCCGGgCGa---AGCUCGa----GcUGUC- -5'
23799 5' -60 NC_005261.1 + 95712 0.66 0.666573
Target:  5'- -cGCGGGCUCGCgcUCGGGCcCGcCGc -3'
miRNA:   3'- uuCGCCCGGGCGa-AGCUCGaGCuGUc -5'
23799 5' -60 NC_005261.1 + 51004 0.66 0.666573
Target:  5'- -cGUGGGCgCgGCgg-GAGCUCGGCGa -3'
miRNA:   3'- uuCGCCCG-GgCGaagCUCGAGCUGUc -5'
23799 5' -60 NC_005261.1 + 121775 0.66 0.666573
Target:  5'- cGGUGGGguggCCGCggccggCGGGCUgGGCAGg -3'
miRNA:   3'- uUCGCCCg---GGCGaa----GCUCGAgCUGUC- -5'
23799 5' -60 NC_005261.1 + 127815 0.66 0.666573
Target:  5'- cGGCGGG-CCGC-UCGcGCUCG-CGGc -3'
miRNA:   3'- uUCGCCCgGGCGaAGCuCGAGCuGUC- -5'
23799 5' -60 NC_005261.1 + 45118 0.67 0.656471
Target:  5'- cGGGCacGGGCgCGCUgaugcUGAcGCUCGACGGc -3'
miRNA:   3'- -UUCG--CCCGgGCGAa----GCU-CGAGCUGUC- -5'
23799 5' -60 NC_005261.1 + 10022 0.67 0.656471
Target:  5'- cGGGCGGGCCuCGCgUCGGgggcGCUCGcuCAc -3'
miRNA:   3'- -UUCGCCCGG-GCGaAGCU----CGAGCu-GUc -5'
23799 5' -60 NC_005261.1 + 86196 0.67 0.656471
Target:  5'- cGAGCGGGCuCCGCgUCGGcGCgcCGAacCGGg -3'
miRNA:   3'- -UUCGCCCG-GGCGaAGCU-CGa-GCU--GUC- -5'
23799 5' -60 NC_005261.1 + 11845 0.67 0.656471
Target:  5'- -cGCGGGCgCGCguucgCGAGCgcgagCGuCAGc -3'
miRNA:   3'- uuCGCCCGgGCGaa---GCUCGa----GCuGUC- -5'
23799 5' -60 NC_005261.1 + 107257 0.67 0.656471
Target:  5'- -cGCGGGCgCGCgggcacgggCGGGCgcgcaucaggCGGCAGg -3'
miRNA:   3'- uuCGCCCGgGCGaa-------GCUCGa---------GCUGUC- -5'
23799 5' -60 NC_005261.1 + 31312 0.67 0.64635
Target:  5'- -cGCgGGGCCCGCgggCGcGCUCGcCGc -3'
miRNA:   3'- uuCG-CCCGGGCGaa-GCuCGAGCuGUc -5'
23799 5' -60 NC_005261.1 + 24690 0.67 0.64635
Target:  5'- gGGGCGGGUgcaUGCaaaUCGGGC-CGGCAGg -3'
miRNA:   3'- -UUCGCCCGg--GCGa--AGCUCGaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 136643 0.67 0.64635
Target:  5'- aAGGCcuGGUCCGCcUgGAGCUCGAUg- -3'
miRNA:   3'- -UUCGc-CCGGGCGaAgCUCGAGCUGuc -5'
23799 5' -60 NC_005261.1 + 38946 0.67 0.64635
Target:  5'- cGGGCGGGCCgCgGCgcgCGGGCUgCG-CAGc -3'
miRNA:   3'- -UUCGCCCGG-G-CGaa-GCUCGA-GCuGUC- -5'
23799 5' -60 NC_005261.1 + 74950 0.67 0.636217
Target:  5'- -cGCGGGCgCGCUcggCGcGCUCGAg-- -3'
miRNA:   3'- uuCGCCCGgGCGAa--GCuCGAGCUguc -5'
23799 5' -60 NC_005261.1 + 116489 0.67 0.636217
Target:  5'- gGGGCGGGCgCGCgguauaaaGAGCgccgccgCGGCGGc -3'
miRNA:   3'- -UUCGCCCGgGCGaag-----CUCGa------GCUGUC- -5'
23799 5' -60 NC_005261.1 + 81771 0.67 0.636217
Target:  5'- -cGCGGGCCagga-CGAGCUCG-CGGa -3'
miRNA:   3'- uuCGCCCGGgcgaaGCUCGAGCuGUC- -5'
23799 5' -60 NC_005261.1 + 75072 0.67 0.636217
Target:  5'- -cGCGcGCCgGCgg-GGGCUCGGCGGg -3'
miRNA:   3'- uuCGCcCGGgCGaagCUCGAGCUGUC- -5'
23799 5' -60 NC_005261.1 + 24902 0.67 0.636217
Target:  5'- cGGCGGGCgCCcCUUCaAGCccUCGGCGGc -3'
miRNA:   3'- uUCGCCCG-GGcGAAGcUCG--AGCUGUC- -5'
23799 5' -60 NC_005261.1 + 127920 0.67 0.636217
Target:  5'- uGGGCucGGGCCCGC-UCGAuGCggCGcACAGc -3'
miRNA:   3'- -UUCG--CCCGGGCGaAGCU-CGa-GC-UGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.