miRNA display CGI


Results 41 - 60 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23799 5' -60 NC_005261.1 + 136612 0.67 0.626082
Target:  5'- gGAGCGGcGCgCGCgcgcCGAGggCGGCGGg -3'
miRNA:   3'- -UUCGCC-CGgGCGaa--GCUCgaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 95013 0.67 0.626082
Target:  5'- gGGGCGGGCuauaaagccgCCGCcggCGGcGCUCGGCGc -3'
miRNA:   3'- -UUCGCCCG----------GGCGaa-GCU-CGAGCUGUc -5'
23799 5' -60 NC_005261.1 + 45635 0.67 0.626082
Target:  5'- cGGCGGGCCCGCgccgGAGCagUGcccaGCGGg -3'
miRNA:   3'- uUCGCCCGGGCGaag-CUCGa-GC----UGUC- -5'
23799 5' -60 NC_005261.1 + 21228 0.67 0.615951
Target:  5'- cGGCGGGCCCGU--CG-GCU-GGCGGc -3'
miRNA:   3'- uUCGCCCGGGCGaaGCuCGAgCUGUC- -5'
23799 5' -60 NC_005261.1 + 40025 0.67 0.615951
Target:  5'- --uCGGGCCCGCagUCGAccgcgaccaGCguggCGACGGg -3'
miRNA:   3'- uucGCCCGGGCGa-AGCU---------CGa---GCUGUC- -5'
23799 5' -60 NC_005261.1 + 127754 0.67 0.605832
Target:  5'- gGAGCGGG-CCGCggCGGGCgcgaaGACGc -3'
miRNA:   3'- -UUCGCCCgGGCGaaGCUCGag---CUGUc -5'
23799 5' -60 NC_005261.1 + 20720 0.67 0.605832
Target:  5'- --uCGGGCCgCGCUg-GGGCUCGGCc- -3'
miRNA:   3'- uucGCCCGG-GCGAagCUCGAGCUGuc -5'
23799 5' -60 NC_005261.1 + 70700 0.67 0.605832
Target:  5'- cAGCGcGGCCCGCg-CGGGCaCGGCc- -3'
miRNA:   3'- uUCGC-CCGGGCGaaGCUCGaGCUGuc -5'
23799 5' -60 NC_005261.1 + 111414 0.67 0.605832
Target:  5'- cGGGCGGGCCacaCGCcggCGGGCaagaGACGGa -3'
miRNA:   3'- -UUCGCCCGG---GCGaa-GCUCGag--CUGUC- -5'
23799 5' -60 NC_005261.1 + 83899 0.68 0.595733
Target:  5'- -cGCGGGgCCGC--CGGGCUcgggacCGACGGg -3'
miRNA:   3'- uuCGCCCgGGCGaaGCUCGA------GCUGUC- -5'
23799 5' -60 NC_005261.1 + 117682 0.68 0.595733
Target:  5'- cGGcCGGGCCCGCggCGAGgC-CGGCc- -3'
miRNA:   3'- uUC-GCCCGGGCGaaGCUC-GaGCUGuc -5'
23799 5' -60 NC_005261.1 + 33837 0.68 0.595733
Target:  5'- -cGCGGGCCCccuggcGCUgggCGGGC-CGGgAGg -3'
miRNA:   3'- uuCGCCCGGG------CGAa--GCUCGaGCUgUC- -5'
23799 5' -60 NC_005261.1 + 22776 0.68 0.5917
Target:  5'- gGGGCGGGcCCCGCgagaaggggguugUCGcGGC-CGGCGGc -3'
miRNA:   3'- -UUCGCCC-GGGCGa------------AGC-UCGaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 5161 0.68 0.585659
Target:  5'- cGGCGGG-CCGCgUCGAGCagGGcCGGg -3'
miRNA:   3'- uUCGCCCgGGCGaAGCUCGagCU-GUC- -5'
23799 5' -60 NC_005261.1 + 33479 0.68 0.585659
Target:  5'- cAGcCGGGCCCGCUcgcggggcccgCGAGCaccaggggCGGCGGc -3'
miRNA:   3'- uUC-GCCCGGGCGAa----------GCUCGa-------GCUGUC- -5'
23799 5' -60 NC_005261.1 + 104807 0.68 0.585659
Target:  5'- cAGCGGGuCCCGCUcCGcAGCggCGucGCGGg -3'
miRNA:   3'- uUCGCCC-GGGCGAaGC-UCGa-GC--UGUC- -5'
23799 5' -60 NC_005261.1 + 23160 0.68 0.584653
Target:  5'- aGAGUGGGCCCggcaggcGCgcCGGGggCGACAGc -3'
miRNA:   3'- -UUCGCCCGGG-------CGaaGCUCgaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 4179 0.68 0.565617
Target:  5'- --cCGGGCCCGCgagcUUCGcGCUCuGCAGc -3'
miRNA:   3'- uucGCCCGGGCG----AAGCuCGAGcUGUC- -5'
23799 5' -60 NC_005261.1 + 20873 0.68 0.555662
Target:  5'- -cGCGGGCCgGCcaUCGccAGCUCGugGc -3'
miRNA:   3'- uuCGCCCGGgCGa-AGC--UCGAGCugUc -5'
23799 5' -60 NC_005261.1 + 2751 0.68 0.555662
Target:  5'- cGGCGGGCCguCGCggCGGGcCUCGAg-- -3'
miRNA:   3'- uUCGCCCGG--GCGaaGCUC-GAGCUguc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.