miRNA display CGI


Results 61 - 80 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23799 5' -60 NC_005261.1 + 70700 0.67 0.605832
Target:  5'- cAGCGcGGCCCGCg-CGGGCaCGGCc- -3'
miRNA:   3'- uUCGC-CCGGGCGaaGCUCGaGCUGuc -5'
23799 5' -60 NC_005261.1 + 72446 0.71 0.381575
Target:  5'- cGGCGGgggcGCCCGCggCGAGCgCGGCGa -3'
miRNA:   3'- uUCGCC----CGGGCGaaGCUCGaGCUGUc -5'
23799 5' -60 NC_005261.1 + 72509 0.66 0.696681
Target:  5'- gAAGCGGGCgCCGCaUCcucCUUGGCGGc -3'
miRNA:   3'- -UUCGCCCG-GGCGaAGcucGAGCUGUC- -5'
23799 5' -60 NC_005261.1 + 73775 0.66 0.716503
Target:  5'- gAGGCGcuGGCCUGCgaCGuGCgcgCGGCGGu -3'
miRNA:   3'- -UUCGC--CCGGGCGaaGCuCGa--GCUGUC- -5'
23799 5' -60 NC_005261.1 + 74950 0.67 0.636217
Target:  5'- -cGCGGGCgCGCUcggCGcGCUCGAg-- -3'
miRNA:   3'- uuCGCCCGgGCGAa--GCuCGAGCUguc -5'
23799 5' -60 NC_005261.1 + 75072 0.67 0.636217
Target:  5'- -cGCGcGCCgGCgg-GGGCUCGGCGGg -3'
miRNA:   3'- uuCGCcCGGgCGaagCUCGAGCUGUC- -5'
23799 5' -60 NC_005261.1 + 78850 0.66 0.686687
Target:  5'- cGGCGGcGCCCGCcgccggagcgCGAGCcgCGuCAGc -3'
miRNA:   3'- uUCGCC-CGGGCGaa--------GCUCGa-GCuGUC- -5'
23799 5' -60 NC_005261.1 + 79413 0.78 0.140222
Target:  5'- cGAGCaGGCCCGUgucggCGAGCUCGGCGc -3'
miRNA:   3'- -UUCGcCCGGGCGaa---GCUCGAGCUGUc -5'
23799 5' -60 NC_005261.1 + 81771 0.67 0.636217
Target:  5'- -cGCGGGCCagga-CGAGCUCG-CGGa -3'
miRNA:   3'- uuCGCCCGGgcgaaGCUCGAGCuGUC- -5'
23799 5' -60 NC_005261.1 + 82056 0.66 0.686687
Target:  5'- -cGCGGGCCaCGUcgcCGGG-UCGACGGc -3'
miRNA:   3'- uuCGCCCGG-GCGaa-GCUCgAGCUGUC- -5'
23799 5' -60 NC_005261.1 + 83899 0.68 0.595733
Target:  5'- -cGCGGGgCCGC--CGGGCUcgggacCGACGGg -3'
miRNA:   3'- uuCGCCCgGGCGaaGCUCGA------GCUGUC- -5'
23799 5' -60 NC_005261.1 + 84132 0.69 0.497204
Target:  5'- cGGGCGGGgUCGCUggCGGGcCUCGGCc- -3'
miRNA:   3'- -UUCGCCCgGGCGAa-GCUC-GAGCUGuc -5'
23799 5' -60 NC_005261.1 + 85965 0.66 0.715518
Target:  5'- uGGCGuGGUCCGUgauugcgcgcUCGAGCUgcgccgcCGACGGg -3'
miRNA:   3'- uUCGC-CCGGGCGa---------AGCUCGA-------GCUGUC- -5'
23799 5' -60 NC_005261.1 + 86196 0.67 0.656471
Target:  5'- cGAGCGGGCuCCGCgUCGGcGCgcCGAacCGGg -3'
miRNA:   3'- -UUCGCCCG-GGCGaAGCU-CGa-GCU--GUC- -5'
23799 5' -60 NC_005261.1 + 88010 0.72 0.357542
Target:  5'- cGGCGGGCCCGUUaaagCG-GC-CGGCGGu -3'
miRNA:   3'- uUCGCCCGGGCGAa---GCuCGaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 90074 0.66 0.696681
Target:  5'- -cGCGGGCgCCGa---GGGCagCGACGGg -3'
miRNA:   3'- uuCGCCCG-GGCgaagCUCGa-GCUGUC- -5'
23799 5' -60 NC_005261.1 + 93943 0.66 0.676648
Target:  5'- -cGCGGGCgCCGCcucCGGGCggUCGGCc- -3'
miRNA:   3'- uuCGCCCG-GGCGaa-GCUCG--AGCUGuc -5'
23799 5' -60 NC_005261.1 + 95013 0.67 0.626082
Target:  5'- gGGGCGGGCuauaaagccgCCGCcggCGGcGCUCGGCGc -3'
miRNA:   3'- -UUCGCCCG----------GGCGaa-GCU-CGAGCUGUc -5'
23799 5' -60 NC_005261.1 + 95712 0.66 0.666573
Target:  5'- -cGCGGGCUCGCgcUCGGGCcCGcCGc -3'
miRNA:   3'- uuCGCCCGGGCGa-AGCUCGaGCuGUc -5'
23799 5' -60 NC_005261.1 + 97390 0.7 0.440775
Target:  5'- -cGCGGcuuucgcGCCUGCcgCGGGCUUGGCGGg -3'
miRNA:   3'- uuCGCC-------CGGGCGaaGCUCGAGCUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.