Results 81 - 100 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23799 | 5' | -60 | NC_005261.1 | + | 97728 | 0.73 | 0.324255 |
Target: 5'- cGGGCGGGCUaacgGCUggcaggggcggggCGGGCUCGGCGGc -3' miRNA: 3'- -UUCGCCCGGg---CGAa------------GCUCGAGCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 98208 | 0.69 | 0.516412 |
Target: 5'- cAGCGGGCgCCGCcaCGgcAGCgCGGCGGg -3' miRNA: 3'- uUCGCCCG-GGCGaaGC--UCGaGCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 98311 | 0.66 | 0.716503 |
Target: 5'- gGGGCGGGCgCCGCcgCcAGCggCGGCGc -3' miRNA: 3'- -UUCGCCCG-GGCGaaGcUCGa-GCUGUc -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 104124 | 0.7 | 0.459803 |
Target: 5'- -cGCGcGGUUCGCcgCGAGCUCGGCc- -3' miRNA: 3'- uuCGC-CCGGGCGaaGCUCGAGCUGuc -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 104172 | 0.71 | 0.423949 |
Target: 5'- -cGCGGGCgCCGCgcgcgggucgUCGGGCggGACGGc -3' miRNA: 3'- uuCGCCCG-GGCGa---------AGCUCGagCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 104438 | 0.75 | 0.219702 |
Target: 5'- uGAGCGGGCCCGCgUCGccgccGC-CGGCGGc -3' miRNA: 3'- -UUCGCCCGGGCGaAGCu----CGaGCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 104807 | 0.68 | 0.585659 |
Target: 5'- cAGCGGGuCCCGCUcCGcAGCggCGucGCGGg -3' miRNA: 3'- uUCGCCC-GGGCGAaGC-UCGa-GC--UGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 106626 | 0.75 | 0.230591 |
Target: 5'- -cGCGGaGCCgCGCgaCGAGCUCGGCGa -3' miRNA: 3'- uuCGCC-CGG-GCGaaGCUCGAGCUGUc -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 107257 | 0.67 | 0.656471 |
Target: 5'- -cGCGGGCgCGCgggcacgggCGGGCgcgcaucaggCGGCAGg -3' miRNA: 3'- uuCGCCCGgGCGaa-------GCUCGa---------GCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 109874 | 0.66 | 0.676648 |
Target: 5'- cAGCGGGgCCCGCgggCGGGCgcccCGGg -3' miRNA: 3'- uUCGCCC-GGGCGaa-GCUCGagcuGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 111414 | 0.67 | 0.605832 |
Target: 5'- cGGGCGGGCCacaCGCcggCGGGCaagaGACGGa -3' miRNA: 3'- -UUCGCCCGG---GCGaa-GCUCGag--CUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 115423 | 0.66 | 0.676648 |
Target: 5'- cAGcCGGGgCCGCggccCGAGCUCGcgcucGCGGc -3' miRNA: 3'- uUC-GCCCgGGCGaa--GCUCGAGC-----UGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 116489 | 0.67 | 0.636217 |
Target: 5'- gGGGCGGGCgCGCgguauaaaGAGCgccgccgCGGCGGc -3' miRNA: 3'- -UUCGCCCGgGCGaag-----CUCGa------GCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 117682 | 0.68 | 0.595733 |
Target: 5'- cGGcCGGGCCCGCggCGAGgC-CGGCc- -3' miRNA: 3'- uUC-GCCCGGGCGaaGCUC-GaGCUGuc -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 121394 | 0.69 | 0.516412 |
Target: 5'- cGGCGGcGCCUGCc-CGAGUgCGACGGc -3' miRNA: 3'- uUCGCC-CGGGCGaaGCUCGaGCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 121775 | 0.66 | 0.666573 |
Target: 5'- cGGUGGGguggCCGCggccggCGGGCUgGGCAGg -3' miRNA: 3'- uUCGCCCg---GGCGaa----GCUCGAgCUGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 123420 | 0.7 | 0.432757 |
Target: 5'- gGGGCGGGCUCGCcaCGGGC-CG-CAGc -3' miRNA: 3'- -UUCGCCCGGGCGaaGCUCGaGCuGUC- -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 125749 | 0.69 | 0.526128 |
Target: 5'- gGGGCcgGGGCCaggGCUgccgCGGGCUCGGCu- -3' miRNA: 3'- -UUCG--CCCGGg--CGAa---GCUCGAGCUGuc -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 127754 | 0.67 | 0.605832 |
Target: 5'- gGAGCGGG-CCGCggCGGGCgcgaaGACGc -3' miRNA: 3'- -UUCGCCCgGGCGaaGCUCGag---CUGUc -5' |
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23799 | 5' | -60 | NC_005261.1 | + | 127815 | 0.66 | 0.666573 |
Target: 5'- cGGCGGG-CCGC-UCGcGCUCG-CGGc -3' miRNA: 3'- uUCGCCCgGGCGaAGCuCGAGCuGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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