miRNA display CGI


Results 61 - 80 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23799 5' -60 NC_005261.1 + 47451 0.66 0.676648
Target:  5'- cAGGCGcccGGCCCGCUUgCGcgggGGCUgGGCGa -3'
miRNA:   3'- -UUCGC---CCGGGCGAA-GC----UCGAgCUGUc -5'
23799 5' -60 NC_005261.1 + 45635 0.67 0.626082
Target:  5'- cGGCGGGCCCGCgccgGAGCagUGcccaGCGGg -3'
miRNA:   3'- uUCGCCCGGGCGaag-CUCGa-GC----UGUC- -5'
23799 5' -60 NC_005261.1 + 45118 0.67 0.656471
Target:  5'- cGGGCacGGGCgCGCUgaugcUGAcGCUCGACGGc -3'
miRNA:   3'- -UUCG--CCCGgGCGAa----GCU-CGAGCUGUC- -5'
23799 5' -60 NC_005261.1 + 44297 0.68 0.545758
Target:  5'- cGGCGGGCcagggCCGCUgcccgCGGGCgccgcaGACGGg -3'
miRNA:   3'- uUCGCCCG-----GGCGAa----GCUCGag----CUGUC- -5'
23799 5' -60 NC_005261.1 + 42215 0.66 0.676648
Target:  5'- -cGCGGGCgccCCGCcgCGAGCUCcGCc- -3'
miRNA:   3'- uuCGCCCG---GGCGaaGCUCGAGcUGuc -5'
23799 5' -60 NC_005261.1 + 40494 0.7 0.478324
Target:  5'- gGAGCGGGCgauggucauggCCaGCUUCGAGCugaugccguagUCGACGc -3'
miRNA:   3'- -UUCGCCCG-----------GG-CGAAGCUCG-----------AGCUGUc -5'
23799 5' -60 NC_005261.1 + 40025 0.67 0.615951
Target:  5'- --uCGGGCCCGCagUCGAccgcgaccaGCguggCGACGGg -3'
miRNA:   3'- uucGCCCGGGCGa-AGCU---------CGa---GCUGUC- -5'
23799 5' -60 NC_005261.1 + 38946 0.67 0.64635
Target:  5'- cGGGCGGGCCgCgGCgcgCGGGCUgCG-CAGc -3'
miRNA:   3'- -UUCGCCCGG-G-CGaa-GCUCGA-GCuGUC- -5'
23799 5' -60 NC_005261.1 + 38919 0.7 0.432757
Target:  5'- -cGCGGGCCCGCg-CGccaAGC-CGGCGGc -3'
miRNA:   3'- uuCGCCCGGGCGaaGC---UCGaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 33837 0.68 0.595733
Target:  5'- -cGCGGGCCCccuggcGCUgggCGGGC-CGGgAGg -3'
miRNA:   3'- uuCGCCCGGG------CGAa--GCUCGaGCUgUC- -5'
23799 5' -60 NC_005261.1 + 33807 0.68 0.555662
Target:  5'- cGGCGGGCuuGuCUUUGGGCggcCGGgGGg -3'
miRNA:   3'- uUCGCCCGggC-GAAGCUCGa--GCUgUC- -5'
23799 5' -60 NC_005261.1 + 33756 0.68 0.555662
Target:  5'- gGGGcCGGGCCCGCUcgCGGGgCccgCGGCGa -3'
miRNA:   3'- -UUC-GCCCGGGCGAa-GCUC-Ga--GCUGUc -5'
23799 5' -60 NC_005261.1 + 33479 0.68 0.585659
Target:  5'- cAGcCGGGCCCGCUcgcggggcccgCGAGCaccaggggCGGCGGc -3'
miRNA:   3'- uUC-GCCCGGGCGAa----------GCUCGa-------GCUGUC- -5'
23799 5' -60 NC_005261.1 + 32748 0.69 0.526128
Target:  5'- -cGCGcGGCCCGCcgcucuaCGGGCUCGGaGGg -3'
miRNA:   3'- uuCGC-CCGGGCGaa-----GCUCGAGCUgUC- -5'
23799 5' -60 NC_005261.1 + 31312 0.67 0.64635
Target:  5'- -cGCgGGGCCCGCgggCGcGCUCGcCGc -3'
miRNA:   3'- uuCG-CCCGGGCGaa-GCuCGAGCuGUc -5'
23799 5' -60 NC_005261.1 + 29198 0.7 0.469017
Target:  5'- -cGCGGcGCCCGCg-CGGGCgcgCGACuGg -3'
miRNA:   3'- uuCGCC-CGGGCGaaGCUCGa--GCUGuC- -5'
23799 5' -60 NC_005261.1 + 28595 0.71 0.398184
Target:  5'- cGGCGGgccGCCCGCgcCGAGCU-GGCGGa -3'
miRNA:   3'- uUCGCC---CGGGCGaaGCUCGAgCUGUC- -5'
23799 5' -60 NC_005261.1 + 24902 0.67 0.636217
Target:  5'- cGGCGGGCgCCcCUUCaAGCccUCGGCGGc -3'
miRNA:   3'- uUCGCCCG-GGcGAAGcUCG--AGCUGUC- -5'
23799 5' -60 NC_005261.1 + 24690 0.67 0.64635
Target:  5'- gGGGCGGGUgcaUGCaaaUCGGGC-CGGCAGg -3'
miRNA:   3'- -UUCGCCCGg--GCGa--AGCUCGaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 23886 0.72 0.34977
Target:  5'- cGGGCGGGCCgGCUagggUGGGCUCGcUGGg -3'
miRNA:   3'- -UUCGCCCGGgCGAa---GCUCGAGCuGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.