miRNA display CGI


Results 81 - 100 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23799 5' -60 NC_005261.1 + 44297 0.68 0.545758
Target:  5'- cGGCGGGCcagggCCGCUgcccgCGGGCgccgcaGACGGg -3'
miRNA:   3'- uUCGCCCG-----GGCGAa----GCUCGag----CUGUC- -5'
23799 5' -60 NC_005261.1 + 12781 0.68 0.555662
Target:  5'- cGGgGGGCUCGUcggCGAGCUCGucguCGGc -3'
miRNA:   3'- uUCgCCCGGGCGaa-GCUCGAGCu---GUC- -5'
23799 5' -60 NC_005261.1 + 13099 0.68 0.555662
Target:  5'- cGGCGGGCUCgGCUcggGGGCgUCGGCGGc -3'
miRNA:   3'- uUCGCCCGGG-CGAag-CUCG-AGCUGUC- -5'
23799 5' -60 NC_005261.1 + 33756 0.68 0.555662
Target:  5'- gGGGcCGGGCCCGCUcgCGGGgCccgCGGCGa -3'
miRNA:   3'- -UUC-GCCCGGGCGAa-GCUC-Ga--GCUGUc -5'
23799 5' -60 NC_005261.1 + 33807 0.68 0.555662
Target:  5'- cGGCGGGCuuGuCUUUGGGCggcCGGgGGg -3'
miRNA:   3'- uUCGCCCGggC-GAAGCUCGa--GCUgUC- -5'
23799 5' -60 NC_005261.1 + 56168 0.68 0.555662
Target:  5'- cGGCgGGGCCCGCgggGAGgaCGACGc -3'
miRNA:   3'- uUCG-CCCGGGCGaagCUCgaGCUGUc -5'
23799 5' -60 NC_005261.1 + 2751 0.68 0.555662
Target:  5'- cGGCGGGCCguCGCggCGGGcCUCGAg-- -3'
miRNA:   3'- uUCGCCCGG--GCGaaGCUC-GAGCUguc -5'
23799 5' -60 NC_005261.1 + 125749 0.69 0.526128
Target:  5'- gGGGCcgGGGCCaggGCUgccgCGGGCUCGGCu- -3'
miRNA:   3'- -UUCG--CCCGGg--CGAa---GCUCGAGCUGuc -5'
23799 5' -60 NC_005261.1 + 67060 0.69 0.526128
Target:  5'- uAGGCGGGCgCGCgcggGGGCUCGcuCGGg -3'
miRNA:   3'- -UUCGCCCGgGCGaag-CUCGAGCu-GUC- -5'
23799 5' -60 NC_005261.1 + 121394 0.69 0.516412
Target:  5'- cGGCGGcGCCUGCc-CGAGUgCGACGGc -3'
miRNA:   3'- uUCGCC-CGGGCGaaGCUCGaGCUGUC- -5'
23799 5' -60 NC_005261.1 + 123420 0.7 0.432757
Target:  5'- gGGGCGGGCUCGCcaCGGGC-CG-CAGc -3'
miRNA:   3'- -UUCGCCCGGGCGaaGCUCGaGCuGUC- -5'
23799 5' -60 NC_005261.1 + 97390 0.7 0.440775
Target:  5'- -cGCGGcuuucgcGCCUGCcgCGGGCUUGGCGGg -3'
miRNA:   3'- uuCGCC-------CGGGCGaaGCUCGAGCUGUC- -5'
23799 5' -60 NC_005261.1 + 52678 0.7 0.459803
Target:  5'- cGAGCGGGCCCuGCUcgCGGGCgCGcCGc -3'
miRNA:   3'- -UUCGCCCGGG-CGAa-GCUCGaGCuGUc -5'
23799 5' -60 NC_005261.1 + 104124 0.7 0.459803
Target:  5'- -cGCGcGGUUCGCcgCGAGCUCGGCc- -3'
miRNA:   3'- uuCGC-CCGGGCGaaGCUCGAGCUGuc -5'
23799 5' -60 NC_005261.1 + 29198 0.7 0.469017
Target:  5'- -cGCGGcGCCCGCg-CGGGCgcgCGACuGg -3'
miRNA:   3'- uuCGCC-CGGGCGaaGCUCGa--GCUGuC- -5'
23799 5' -60 NC_005261.1 + 55054 0.7 0.469017
Target:  5'- -cGCGGGgCCGg--CGAGCUCGGCc- -3'
miRNA:   3'- uuCGCCCgGGCgaaGCUCGAGCUGuc -5'
23799 5' -60 NC_005261.1 + 40494 0.7 0.478324
Target:  5'- gGAGCGGGCgauggucauggCCaGCUUCGAGCugaugccguagUCGACGc -3'
miRNA:   3'- -UUCGCCCG-----------GG-CGAAGCUCG-----------AGCUGUc -5'
23799 5' -60 NC_005261.1 + 84132 0.69 0.497204
Target:  5'- cGGGCGGGgUCGCUggCGGGcCUCGGCc- -3'
miRNA:   3'- -UUCGCCCgGGCGAa-GCUC-GAGCUGuc -5'
23799 5' -60 NC_005261.1 + 4526 0.69 0.516412
Target:  5'- -cGCGGGCgCCGCggCGAGggCGcCGGg -3'
miRNA:   3'- uuCGCCCG-GGCGaaGCUCgaGCuGUC- -5'
23799 5' -60 NC_005261.1 + 98208 0.69 0.516412
Target:  5'- cAGCGGGCgCCGCcaCGgcAGCgCGGCGGg -3'
miRNA:   3'- uUCGCCCG-GGCGaaGC--UCGaGCUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.